Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_A23
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507 32 0.58
11_01_0680 - 5554012-5554028,5555525-5555678,5555790-5555951,555... 29 5.4
04_03_0802 - 19830614-19831275,19831426-19831507 29 5.4
06_03_1121 + 27767707-27768065,27768612-27769034,27770013-277701... 28 7.2
12_02_1004 + 25202732-25202783,25202997-25203181,25203269-252035... 28 9.5
12_02_0250 - 16432160-16432672,16432751-16433066,16433524-164339... 28 9.5
12_01_0992 + 10067834-10068133 28 9.5
12_01_0166 - 1241367-1241879,1241959-1242274,1243197-1243266,124... 28 9.5
11_01_0632 - 5069425-5069441,5070656-5070809,5070889-5071050,507... 28 9.5
10_01_0157 - 1785738-1786247,1786334-1786666,1787248-1787624,178... 28 9.5
05_03_0622 - 16293341-16293350,16293783-16294063,16294343-162944... 28 9.5
04_04_1012 - 30104401-30104955,30105066-30106841 28 9.5
04_04_1005 - 30043698-30044252,30044363-30046138 28 9.5
04_03_0808 - 19872656-19873165,19873251-19873583,19874443-198745... 28 9.5
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317 28 9.5
01_06_0315 + 28416280-28416403,28416488-28416720,28417504-284178... 28 9.5
01_02_0083 - 10959091-10959222,10959318-10959501,10959935-109600... 28 9.5
>05_06_0108 - 25620685-25621115,25621517-25621602,25621963-25622507
Length = 353
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 287 GFPAPAPRAHPALSPTERSPAKAGLHVNFSDKGEVKERREKFLT 418
G PAP P A A SP +P G+ + GEV RE+++T
Sbjct: 138 GTPAPPPPAAEAQSPVTPAPVSTGMEQEMNGGGEVD--REEWIT 179
>11_01_0680 -
5554012-5554028,5555525-5555678,5555790-5555951,
5556130-5557148,5559808-5559835,5560996-5561079,
5561442-5561654,5562267-5562569
Length = 659
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 188 RHTPRLQHSTQHYNGYVDDHTLDTRGSFRGTQRPNASAMRLK 63
RH+P L+ T +H L+ +GS+ T+R +A LK
Sbjct: 588 RHSPVLEKLTLELFCQESEHILEMKGSYNQTERSSAIPEHLK 629
>04_03_0802 - 19830614-19831275,19831426-19831507
Length = 247
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -1
Query: 278 PLRTPCRTQPHRRRCLA*SG--GRSVPP 201
P PC+ PHRRR A SG R+VPP
Sbjct: 139 PYPVPCKCCPHRRRRHARSGPARRAVPP 166
>06_03_1121 +
27767707-27768065,27768612-27769034,27770013-27770175,
27770271-27770381,27770895-27770963,27771117-27771203,
27771967-27772752
Length = 665
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 385 RGKRATREVPNGEVWQPSDGTDTQATRGRDVALRRAAEALRDTEGEQ 525
RG + + P GE + T Q +RG D AE R G++
Sbjct: 594 RGTKREQRRPGGERGDRYETTSDQGSRGHDATGNSGAEGARSQSGDR 640
>12_02_1004 +
25202732-25202783,25202997-25203181,25203269-25203509,
25203617-25204022,25204618-25204795,25204875-25205387
Length = 524
Score = 27.9 bits (59), Expect = 9.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 158 QHYNGYVDDHTLD 120
+HYNGY++DH D
Sbjct: 347 EHYNGYIEDHKAD 359
>12_02_0250 -
16432160-16432672,16432751-16433066,16433524-16433962,
16434037-16434277,16434365-16434549,16434763-16434814
Length = 581
Score = 27.9 bits (59), Expect = 9.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 158 QHYNGYVDDHTLD 120
+HYNGY++DH D
Sbjct: 404 EHYNGYIEDHKAD 416
>12_01_0992 + 10067834-10068133
Length = 99
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 388 GKRATREVPNGEVWQPSDGTDTQATR 465
G+ A R+ NGE+W+ +DG T+ R
Sbjct: 56 GEVALRQRRNGEIWRVADGRGTKKRR 81
>12_01_0166 -
1241367-1241879,1241959-1242274,1243197-1243266,
1243351-1243576,1243664-1243851,1244065-1244176,
1245371-1245664
Length = 572
Score = 27.9 bits (59), Expect = 9.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 158 QHYNGYVDDHTLD 120
+HYNGY++DH D
Sbjct: 395 EHYNGYIEDHKAD 407
>11_01_0632 -
5069425-5069441,5070656-5070809,5070889-5071050,
5071270-5072199
Length = 420
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 188 RHTPRLQHSTQHYNGYVDDHTLDTRGSFRGTQRPNASAMRLKL 60
+H+P L+ T H +H ++ GSF RP + RL +
Sbjct: 349 KHSPVLEKLTLHLFSKGPEHKVELNGSFGLMDRPTGISERLNI 391
>10_01_0157 -
1785738-1786247,1786334-1786666,1787248-1787624,
1787709-1787934,1788148-1788257,1788420-1788471
Length = 535
Score = 27.9 bits (59), Expect = 9.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 158 QHYNGYVDDHTLD 120
+HYNGY++DH D
Sbjct: 359 EHYNGYIEDHKAD 371
>05_03_0622 -
16293341-16293350,16293783-16294063,16294343-16294474,
16294561-16294741,16295054-16295096,16295183-16295249,
16296708-16296834,16296985-16297620,16298253-16298761,
16298842-16299157,16299615-16300053,16300128-16300353,
16300441-16300625,16300839-16300950,16301459-16301495,
16301977-16302011,16302497-16302810,16303463-16303475
Length = 1220
Score = 27.9 bits (59), Expect = 9.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 158 QHYNGYVDDHTLD 120
+HYNGY++DH D
Sbjct: 552 EHYNGYIEDHKAD 564
>04_04_1012 - 30104401-30104955,30105066-30106841
Length = 776
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 352 GRTAR-QLQR*GRGKRATREVPNGEVWQPSDGTDTQATRGRDVALRR 489
GR AR Q R GRG+R + W+ +D D + RGRD+ R
Sbjct: 353 GRHARDQGGRGGRGRRRGSGNDHPRPWRRNDRDDDRDDRGRDLGRGR 399
>04_04_1005 - 30043698-30044252,30044363-30046138
Length = 776
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 352 GRTAR-QLQR*GRGKRATREVPNGEVWQPSDGTDTQATRGRDVALRR 489
GR AR Q R GRG+R + W+ +D D + RGRD+ R
Sbjct: 353 GRHARDQGGRGGRGRRRGSGNDHPRPWRRNDRDDDRDDRGRDLGRGR 399
>04_03_0808 -
19872656-19873165,19873251-19873583,19874443-19874543,
19874628-19874853,19874941-19875079,19875339-19875451,
19875628-19875911,19876287-19876326
Length = 581
Score = 27.9 bits (59), Expect = 9.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 158 QHYNGYVDDHTLD 120
+HYNGY++DH D
Sbjct: 405 EHYNGYIEDHKAD 417
>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
Length = 291
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 293 PAPAPRAHPALSPTERSPAKAGLH 364
P PAP PA +P R PA+A H
Sbjct: 149 PPPAPAPRPAPAPAPRVPARAVEH 172
>01_06_0315 +
28416280-28416403,28416488-28416720,28417504-28417818,
28417905-28418423
Length = 396
Score = 27.9 bits (59), Expect = 9.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 158 QHYNGYVDDHTLD 120
+HYNGY++DH D
Sbjct: 217 EHYNGYIEDHKAD 229
>01_02_0083 -
10959091-10959222,10959318-10959501,10959935-10960056,
10960143-10960472
Length = 255
Score = 27.9 bits (59), Expect = 9.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 158 QHYNGYVDDHTLD 120
+HYNGY++DH D
Sbjct: 103 EHYNGYIEDHKAD 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,130,872
Number of Sequences: 37544
Number of extensions: 299392
Number of successful extensions: 1125
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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