Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_A20
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    31   0.13 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    29   0.94 
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    28   1.2  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    27   3.8  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   5.0  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    26   6.6  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   8.8  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   8.8  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 112 FIKKCESDDSKCLKESAQATIPIFVEGIENLGV 210
           FI K  +  S+CL+  A   +PIF++G  NL +
Sbjct: 579 FIMKALASTSRCLRVVAAKVLPIFIKGPNNLDI 611


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
 Frame = -1

Query: 708  NNLSGYSVHYWRSYFEDD---LVSAGRY*LFSCLGENIIPVKQIVKFQGRLIFELVIMVP 538
            N LSG +V ++  + EDD   L+ A ++  F C+ ++I  +    KF+ + +    I   
Sbjct: 859  NELSGKNVLFFY-FLEDDSEKLLKACQH--FICVKDSIKRLGDN-KFEDKSLRICTIPNS 914

Query: 537  VFHRPMLNTIRT-SFYAKISFD*YLNLP 457
            +F  P  +T  + SF+ K+S D Y N P
Sbjct: 915  IFDSPNSHTTNSNSFFTKVSLDIYNNDP 942


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +1

Query: 295  GLRNTVVKKIRRNKLKSKLSITLLCSVDLEGEYELDGQLLILPIRGKGRLHAALRKVQIS 474
            G  N +++++   KLK  L+     S  +   YE+   L++     K  L+ AL  V  +
Sbjct: 839  GSDNDLIRRLFSGKLKQTLNDA---SQGVRSNYEIFSHLIVDLFEEKQTLYDALDGVFET 895

Query: 475  VEADLGVET 501
            V  D+G ET
Sbjct: 896  VNIDMGSET 904


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 705 NLSGYSVHYWRSYFEDDLVSAGRY*LFSCLGENI 604
           ++S Y+VH WRS+F   LV          +GENI
Sbjct: 547 DISTYNVHQWRSHF--GLVGQEPVLFSGTIGENI 578


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 536 SFTVQC*TPSAPVSTP 489
           +FT+Q  TPS PVSTP
Sbjct: 113 NFTLQFTTPSGPVSTP 128


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = +1

Query: 547 NYQLKDQSTLELDNLFDGNDVLAQAAKQLIATSGNEIILEVGSPIVNAIATKIVENVKNF 726
           N Q+ +++ + L N++   D   +   Q    +     LE+G P  N+   K+V++  + 
Sbjct: 37  NAQVDEETPVLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQ 96

Query: 727 FK 732
           +K
Sbjct: 97  YK 98


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 208 VEKLDPF-NIKYLDASSQLLKLILKDVTARGLRNTVVKKIRRNKLKSKLSITLLCSVDLE 384
           +E LD   N+ YLD S   +K I      +GL N    + R  ++++   +  L +++L 
Sbjct: 97  IENLDNVKNLTYLDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELG 156

Query: 385 G 387
           G
Sbjct: 157 G 157


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 403 HPVRIPLQGQPNIEALWIVSTSICFAVSFSQQY 305
           HP+ I +       + W  +TSIC   +  +QY
Sbjct: 21  HPINILIDNPHQANSRWSCNTSICKPNNSEEQY 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,632
Number of Sequences: 5004
Number of extensions: 58202
Number of successful extensions: 203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)