Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_A20
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0283 + 13887388-13887573,13887711-13887806,13888517-138886...    31   0.98 
01_01_0402 + 3046504-3046582,3047265-3047487,3047954-3048107,304...    29   5.2  
06_02_0261 - 13561393-13561647                                         28   6.9  
03_01_0071 + 580988-581134,581276-581359,581499-581573,581892-58...    28   6.9  

>04_03_0283 +
           13887388-13887573,13887711-13887806,13888517-13888637,
           13888734-13888840,13888949-13889166,13890219-13890396,
           13890492-13890611,13891601-13891687,13892401-13892511,
           13892618-13893439
          Length = 681

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 307 TVVKKIRRNKLKSKLSITLLCSVDLEGEYELDGQLLILPIRGKGRLHAALRKVQISVEAD 486
           TVVKKI R K++   S    C + +E    L  Q+  L   G   +   L  +  S+E D
Sbjct: 400 TVVKKIARKKIR---SFQEFCDMPVEERATLLTQVAGLSDEGAQDVELVLEMIP-SIEVD 455

Query: 487 LGVET-GADGVQHWTV 531
           +  ET G +G+Q   V
Sbjct: 456 IKCETEGEEGIQEGDV 471


>01_01_0402 +
           3046504-3046582,3047265-3047487,3047954-3048107,
           3048253-3048355,3048554-3048738,3048972-3049051,
           3049433-3049511,3050015-3050096,3050221-3050279,
           3050379-3050684,3050825-3050989
          Length = 504

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 211 LRQDSRCLRQISVWSLEQILLGILNHQIHIF 119
           L+ D+R LR+ S W+L  I  G   H+  IF
Sbjct: 339 LKSDNRVLRKESSWALSNIAAGSFEHKKLIF 369


>06_02_0261 - 13561393-13561647
          Length = 84

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 190 GIENLGVEKLDPFNIKYLDASSQLLKLILKDVTARGLRNTVVKKIRRN 333
           G  ++ V+ L    +  LDA S+LL L+ +     GLR    K+ ++N
Sbjct: 35  GGRDIHVKMLIELRLHVLDAPSRLLDLVPRSAVLFGLRRAKAKETQQN 82


>03_01_0071 +
           580988-581134,581276-581359,581499-581573,581892-581973,
           582078-582223,582337-582408,582765-582837,582933-582998,
           583089-583123,583316-583387,583494-583622,583706-583813,
           584062-584118,584323-584439,584530-584612,585345-585411,
           585705-585776,585874-585924,586704-586763,586867-587016,
           587107-587322
          Length = 653

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +1

Query: 193 IENLGVEKLDPFNIKYLDASSQLLKLILKDVTAR 294
           + NL  E+   FNIKYL  SS+L+ L LKD + R
Sbjct: 302 LNNLDQEEDAAFNIKYL-TSSKLMGLELKDPSFR 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,235,053
Number of Sequences: 37544
Number of extensions: 336527
Number of successful extensions: 880
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)