Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_A20
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067214-2|AAC17003.1|  344|Caenorhabditis elegans Hypothetical ...    31   0.66 
Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    31   0.88 
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AF067214-2|AAC17003.1|  344|Caenorhabditis elegans Hypothetical
           protein F56C3.4 protein.
          Length = 344

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 34  CLAXVM--FKFLFLIFCSVYVTHSAVAPFIKKCESDDSKC 147
           C+A V+  F  L +++CS+ V  +AVAPFI         C
Sbjct: 122 CVAGVLGVFIVLLVVYCSLAVKTTAVAPFIHDASGSSEAC 161


>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 6/168 (3%)
 Frame = +1

Query: 1   DSQEXFLTLKLCLAXVMFKFLFLIFCSVYVTHSAVAPFIKKCES--DDSKCLKESAQATI 174
           +S+  F   KL    V  K +   F ++ +TH  +   +KK  +  + +  +K +   T+
Sbjct: 74  NSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTL 133

Query: 175 PIFVEGIENLGVEKLDPFNI----KYLDASSQLLKLILKDVTARGLRNTVVKKIRRNKLK 342
            +FV       V ++   +     K     S+++  I K+VT   L+  VV K+  + + 
Sbjct: 134 RVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKE-VVSKLIPDSIG 192

Query: 343 SKLSITLLCSVDLEGEYELDGQLLILPIRGKGRLHAALRKVQISVEAD 486
             +  T      L+  Y    +++  P    GRLH  L    I+V AD
Sbjct: 193 KDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLH-DLHGDSITVGAD 239


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 262 LKLILKDVTARGLRNTVVKKIRRNKLKSKL 351
           LK+++KD+ A   RNT VK +   + KS L
Sbjct: 179 LKVLMKDLAAECKRNTEVKVLHPTRFKSHL 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,609,302
Number of Sequences: 27780
Number of extensions: 319663
Number of successful extensions: 915
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)