Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_A18
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    28   1.8  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   5.4  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    26   5.4  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    25   9.4  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    25   9.4  

>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 222 HYHGSNIILFEENTVAYRKASFAHGLTFSEKPLLPGEIFLVE 347
           HYH   I   EEN  AYR A++A       K L  G++  V+
Sbjct: 117 HYHPGEINFDEENWEAYRAANYAFAEAI-VKNLQDGDLIWVQ 157


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 781 LIIKCISXKSWSFLLSLGQGTNITPIRLPASIG 683
           LI+K +   +   LL++G G N  P+   A +G
Sbjct: 891 LIVKMVKRNTGEVLLAIGDGANDVPMIQAAHVG 923


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +1

Query: 460 ISLTMVCHGYSQFRNH----KTMYLLNLLIKYLQGDGKTSRG 573
           IS+  V   Y   +N+    K  Y +NLL KY+ G    +RG
Sbjct: 337 ISILSVVTKYKDKKNNFLPPKDFYFINLLFKYISGSLTFNRG 378


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 502 NHKTMYLLNLLIKYLQGDGKTSRG 573
           NH   ++LNL ++   GDG   RG
Sbjct: 605 NHTVTHILNLALRNTLGDGIDQRG 628


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +1

Query: 424 WVTKDCLSMRYQISLTMVCHGYSQFRNHKTMYLLNLL 534
           W+T   + + YQ++ T+ C  YS   +   ++++N +
Sbjct: 376 WITHHYIQLGYQLADTVSCAAYSFAVSCALLFVMNYI 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,828
Number of Sequences: 5004
Number of extensions: 68873
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)