Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_A18
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0082 - 22603038-22603472,22603561-22604499                       30   2.4  
04_04_0077 + 22568757-22568895,22568999-22569954,22570021-22570488     29   4.2  
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336...    29   4.2  
04_04_0090 - 22747049-22747282,22747438-22747847,22748562-227487...    28   7.4  
01_07_0064 + 40834649-40834786,40834934-40834997,40835333-408353...    28   7.4  
04_04_0087 + 22718930-22719068,22719165-22719484,22721406-22722500     28   9.8  
04_04_0078 + 22573413-22573554,22573637-22573959,22574681-225753...    28   9.8  

>04_04_0082 - 22603038-22603472,22603561-22604499
          Length = 457

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 228 HGSNIILFEENTVAYRKASFAHGLTFSEKPL---LPGEIFLVEIEKTERGWSGHMRLGLT 398
           HGS +      TV     +F+   ++S   L   +PGEI+ VE+    +G +  + LGL 
Sbjct: 326 HGSKMAKGYAVTVLVMTCAFSASFSWSWGALYWAIPGEIYPVEVRSAGQGVAVALNLGLN 385

Query: 399 LLEPQ 413
            ++ Q
Sbjct: 386 FVQAQ 390


>04_04_0077 + 22568757-22568895,22568999-22569954,22570021-22570488
          Length = 520

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 318 LLPGEIFLVEIEKTERGWSGHMRLGLTLLEPQ 413
           ++PGEIF VE+    +  S  + LGLT ++ Q
Sbjct: 421 VIPGEIFPVEVRSAGQAVSVSVTLGLTFVQTQ 452


>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
            3366324-3366449,3367056-3367262,3367399-3367492,
            3367575-3367621,3367705-3368157,3368261-3368560,
            3368656-3369114,3369189-3369410,3369659-3369890,
            3370051-3370422,3371210-3371322,3371682-3371903,
            3371977-3372180,3372308-3372572,3373123-3373311,
            3373441-3373768,3373843-3374248,3374339-3374648,
            3375677-3375837,3376825-3376998,3377265-3377609,
            3377713-3377754,3378585-3378734,3378847-3379002,
            3379088-3379540,3379651-3379966,3380402-3380839,
            3381475-3381697,3383538-3383852,3384033-3384095,
            3384699-3384903,3385362-3385425,3386014-3386204
          Length = 3048

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 549  GRWENEPRVSVLGDGHVVKTPRGYISKMILKPQTVSQNGT 668
            G WEN  ++  LGDG +V++ R +  K ++    VS +G+
Sbjct: 2785 GNWENSFQIISLGDGRIVQSVRQH--KDVVSCVAVSSDGS 2822


>04_04_0090 -
           22747049-22747282,22747438-22747847,22748562-22748757,
           22749511-22749583,22749673-22749753,22749855-22749940,
           22750050-22750126,22750313-22750409,22751025-22752020,
           22752882-22752926
          Length = 764

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 273 RKASFAHGLTFSEKPL---LPGEIFLVEIEKTERGWSGHMRLGLTLLEPQA 416
           R+ S +    +S  PL   +PGEIF V+I    +  +  + LGLT ++ Q+
Sbjct: 579 RRTSSSQRRAWSWGPLGWVIPGEIFPVDIRSAGQAMNVSIGLGLTFVQTQS 629


>01_07_0064 +
           40834649-40834786,40834934-40834997,40835333-40835391,
           40835602-40835677,40835775-40835846,40837641-40837728,
           40838239-40838497,40838766-40839000,40839447-40839470,
           40839910-40839997,40840110-40840300,40841082-40841322,
           40841803-40842556
          Length = 762

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 548 RAMGKRAAGFGLRRWSCSKNATWLHI*DDFKATDCLTEWNTP--RYFTYGCWQPYWSNVC 721
           RA+ +  AGFG+R  +CS++        D    DCL  WN         G   P  ++VC
Sbjct: 513 RAIVEELAGFGVRVHTCSRH--------DADLQDCLRRWNAADGGGLGGGAAAPVTASVC 564

Query: 722 SLS 730
            +S
Sbjct: 565 DVS 567


>04_04_0087 + 22718930-22719068,22719165-22719484,22721406-22722500
          Length = 517

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 318 LLPGEIFLVEIEKTERGWSGHMRLGLTLLEPQ 413
           ++PGEIF VEI    +G S  + LG T +  Q
Sbjct: 412 VIPGEIFPVEIRSAGQGISVAVNLGATFVLTQ 443


>04_04_0078 +
           22573413-22573554,22573637-22573959,22574681-22575313,
           22575383-22575838
          Length = 517

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 318 LLPGEIFLVEIEKTERGWSGHMRLGLTLLEPQA 416
           ++PGEIF V+I    +  +  + LGLT ++ Q+
Sbjct: 414 VIPGEIFPVDIRSAGQAMNVSIGLGLTFVQTQS 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,179,536
Number of Sequences: 37544
Number of extensions: 420248
Number of successful extensions: 835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)