Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_A17
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    26   3.7  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    25   6.4  
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.4  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.4  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    25   8.4  

>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 339 RFRVVIALTIFYIYLRII*NFLHYFYFNNLKIV-TI*RGNDGNHFKNKI 196
           ++  +I++   + YL+I+     Y   NNL I  TI R N      NK+
Sbjct: 157 KYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKL 205


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/66 (19%), Positives = 29/66 (43%)
 Frame = +1

Query: 40  ALMYFVIPQVHCYELKRFYLYVLVYNICGV*YTYTVIE*FCGYEMLVFSLLRYFVFKMVS 219
           ++MY +    HC  + R  +Y +    C V  T +        E+    + R +++ ++S
Sbjct: 231 SIMYMIPQITHCTPVSRSVMYGIQNGFCAVLSTLSTF----SNELHTMPIKRAYIYCIIS 286

Query: 220 IVASLN 237
           +  S +
Sbjct: 287 VAISFS 292


>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 244 DLQIIKVKIM*KILNNS*INVKYS*SDNDSKTH 342
           ++Q+   KI+ K +NN+ +   +S  +N++K H
Sbjct: 169 EMQLYMTKIIDKAMNNASLENLFSLDENNTKIH 201


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/66 (19%), Positives = 29/66 (43%)
 Frame = +1

Query: 40  ALMYFVIPQVHCYELKRFYLYVLVYNICGV*YTYTVIE*FCGYEMLVFSLLRYFVFKMVS 219
           ++MY +    HC  + R  +Y +    C V  T +        E+    + R +++ ++S
Sbjct: 231 SIMYMIPQITHCTPVSRSVMYGIQNGFCAVLSTLSTF----SNELHTMPIKRAYIYCIIS 286

Query: 220 IVASLN 237
           +  S +
Sbjct: 287 VAISFS 292


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 36  TCINVFCYPASALL 77
           TC+NV C P+ ALL
Sbjct: 83  TCLNVGCIPSKALL 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,505,226
Number of Sequences: 5004
Number of extensions: 29111
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)