Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_A17
(500 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF393493-1|AAL60418.1| 142|Apis mellifera odorant binding prote... 23 1.8
AF166497-1|AAD51945.1| 142|Apis mellifera putative odorant-bind... 23 1.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 5.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 5.5
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 21 5.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.2
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 21 9.5
>AF393493-1|AAL60418.1| 142|Apis mellifera odorant binding protein
ASP2 protein.
Length = 142
Score = 23.0 bits (47), Expect = 1.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 202 VFKMVSIVASLNRYDLQIIK 261
V+KM+ +V + N D+Q++K
Sbjct: 90 VYKMIEVVHAGNADDIQLVK 109
>AF166497-1|AAD51945.1| 142|Apis mellifera putative odorant-binding
protein ASP2 protein.
Length = 142
Score = 23.0 bits (47), Expect = 1.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 202 VFKMVSIVASLNRYDLQIIK 261
V+KM+ +V + N D+Q++K
Sbjct: 90 VYKMIEVVHAGNADDIQLVK 109
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 5.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 113 ITYVVYNTHTQLLNSFVAMRC*FSLYLGILFLKWFPSLPR 232
+T +V N H + + +V ++ +LFL+W P L R
Sbjct: 342 LTVLVLNFHHRTPDRYV-----MPSWIKMLFLQWLPCLLR 376
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 5.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 113 ITYVVYNTHTQLLNSFVAMRC*FSLYLGILFLKWFPSLPR 232
+T +V N H + + +V ++ +LFL+W P L R
Sbjct: 342 LTVLVLNFHHRTPDRYV-----MPSWIKMLFLQWLPCLLR 376
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 21.4 bits (43), Expect = 5.5
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 89 GFICMFWCITYVVYNTHTQLL 151
G I M+W V+ T+T +L
Sbjct: 208 GMIMMYWFPLVVIIYTYTSIL 228
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.2
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 92 FIC-MFWCITYVVYNTHTQLLNSFVAMRC*FSLYLGILFLKWFPSLPR 232
F C MF + VV + + R ++ +LFL+W P L R
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSWIKMLFLQWLPCLLR 308
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.2
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 92 FIC-MFWCITYVVYNTHTQLLNSFVAMRC*FSLYLGILFLKWFPSLPR 232
F C MF + VV + + R ++ +LFL+W P L R
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSWIKMLFLQWLPCLLR 308
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.2
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 92 FIC-MFWCITYVVYNTHTQLLNSFVAMRC*FSLYLGILFLKWFPSLPR 232
F C MF + VV + + R ++ +LFL+W P L R
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSWIKMLFLQWLPCLLR 308
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.2
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 92 FIC-MFWCITYVVYNTHTQLLNSFVAMRC*FSLYLGILFLKWFPSLPR 232
F C MF + VV + + R ++ +LFL+W P L R
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSWIKMLFLQWLPCLLR 308
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.2
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 92 FIC-MFWCITYVVYNTHTQLLNSFVAMRC*FSLYLGILFLKWFPSLPR 232
F C MF + VV + + R ++ +LFL+W P L R
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSWIKMLFLQWLPCLLR 308
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.2
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 92 FIC-MFWCITYVVYNTHTQLLNSFVAMRC*FSLYLGILFLKWFPSLPR 232
F C MF + VV + + R ++ +LFL+W P L R
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSWIKMLFLQWLPCLLR 308
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 20.6 bits (41), Expect = 9.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Frame = -2
Query: 133 IIHHICYTPKHTNKTFLIH 77
I+ IC+ P HT + ++
Sbjct: 277 ILFFICWAPFHTQRLLYVY 295
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,717
Number of Sequences: 438
Number of extensions: 2070
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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