Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_A13
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 45 1e-05
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S... 45 1e-05
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 34 0.020
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M... 28 1.7
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 27 2.2
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 27 3.0
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 3.9
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 26 6.9
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 6.9
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 25 9.1
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 44.8 bits (101), Expect = 1e-05
Identities = 31/107 (28%), Positives = 52/107 (48%)
Frame = +2
Query: 161 AGANIVALSRTRSHLESLQSEYPSIDIVDVDIGDWEKTRKVVESLGHFDALVNNAAVAVC 340
AG +IV S+ + +LQ++ D ++ I KV+++LG D L+NNA +A
Sbjct: 33 AGIDIVDPSKVQDAALALQADVSKADQIETAI------EKVIQTLGPIDVLINNAGLADD 86
Query: 341 EPFLDCSPSNFDKTFDVNVKAVLNISQVVARKMIENKTHGAIVNISS 481
PF S ++D + ++ + V M + G+IVNI S
Sbjct: 87 TPFEQLSHESWDHDVSLVLRGNYLTQRYVIPHMAKQGKGGSIVNIGS 133
>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 44.8 bits (101), Expect = 1e-05
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Frame = +2
Query: 164 GANIVALSRTRSHLESLQSEYPSIDIVDVDIGDWEKTRKVVESL-----GHFDALVNNAA 328
G ++A +R +++L + + +D+ D + R+V + + G L+NNA
Sbjct: 29 GFQVLATARQVERMDNLTKA--GLQTLKLDVTDEDSVREVEQEVRKFTNGSLHYLINNAG 86
Query: 329 VAVCEPFLDCSPSNFDKTFDVNVKAVLNISQVVARKMIENKTHGAIVNISSQASKVRF 502
P +D + K DVN V+ +++ ++I K G IVN++S S V F
Sbjct: 87 APCSAPAIDLDIEDVSKVMDVNFYGVIRMNKAFQHQLIRAK--GTIVNVNSLVSYVPF 142
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 34.3 bits (75), Expect = 0.020
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 9/124 (7%)
Frame = +2
Query: 101 ILVTXXXXXXXXXXXXELWRAGANIVALSRTRSHLESLQSEY--------PSIDIVDVDI 256
ILVT EL GAN+ ++RT + L+ +E + VD+
Sbjct: 25 ILVTGGSQGLGKAIAKELVLRGANVTIVARTVTKLQEAVAELSDSKIHEDQQVSFESVDL 84
Query: 257 GDWEKTRKVVESLGHF-DALVNNAAVAVCEPFLDCSPSNFDKTFDVNVKAVLNISQVVAR 433
+E ++E L D +V+ A + F + PS F+K N A + + R
Sbjct: 85 TSYESVHSMIERLPFCPDHVVHCAGSCIPGFFTELDPSVFEKQMRQNYLASVYVCHAAIR 144
Query: 434 KMIE 445
+M E
Sbjct: 145 RMKE 148
>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 27.9 bits (59), Expect = 1.7
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 12/133 (9%)
Frame = +2
Query: 89 KGKSILVTXXXXXXXXXXXXELWRAGANIVALSRTRSHLESLQSEYPSIDIV---DVDIG 259
KG +VT +L +G N+V +SRT+ L++L E ++ V + I
Sbjct: 56 KGYWAVVTGATDGIGKEYATQLAMSGFNVVLISRTQEKLDALAKELETVAKVKTRTIAID 115
Query: 260 DWEKTRKVVESLGHFD-------ALVNNAAVAVCEP--FLDCSPSNFDKTFDVNVKAVLN 412
+ T + E L H D L+NN + P F + + D +N L+
Sbjct: 116 YTKTTAETFEKL-HQDLVGTPITVLINNVGQSHYMPTSFAETTVKEMDDIMHINCFGTLH 174
Query: 413 ISQVVARKMIENK 451
++ V M+ +
Sbjct: 175 TTKAVLSIMLRER 187
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +2
Query: 473 ISSQASKVRFFIILNHRSNLD----NCCIVILIDVFFSIFMNNKKKGFSFI*KT 622
ISS+ S+ +F +I+ +SNL+ C + + D FS ++ FS I KT
Sbjct: 352 ISSEGSQSKFLLIIAWKSNLNTVIQKCNLSLDQDESFSCVWSHSLDSFSLIEKT 405
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +2
Query: 326 AVAVCEPFLDCSPSNFDKTFDVNVKAVLNISQVVARKMIENKTHGAIVNISSQASKVRF 502
++++ E +DCSPS D+ D ++A+ I ++ + I+++ A +V F
Sbjct: 1122 SLSILEKLVDCSPSIIDEQVDTILEALRKIIELRKTEKTLKTDSDNILDLVRSALRVLF 1180
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 239 IVDVDIGDWEKTRKVVESLGHFDALVNNAAVAVCE 343
++ VDI D T + + ++GH L N AV C+
Sbjct: 586 VIPVDICDIRLTFQSMSAMGHLTFLDNRIAVVSCD 620
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 287 ESLGHFDALVNNAAVAVCEPFLDCSPSNFDKTFDVN 394
E+ A VN+A+ V EPF+ NFD + VN
Sbjct: 259 ETAEEIQAKVNDASADVHEPFVYNHFRNFDASMHVN 294
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 224 YPSIDIVDVDIGDWEKTRKVVESLGHFDALVNNA 325
+P+ ++G W R +E+L +FDA N A
Sbjct: 593 FPNSGKTPTEVGVWSIVRGALETLQNFDARNNTA 626
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 9.1
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = -3
Query: 341 HIQQQLRCSPTHQSDLKIQQPSSSSPNLLYQRLQCL*RGIHSEDFLSA---NEFVTMQLY 171
HI LR H ++K + PN +YQ + L + H L A + T
Sbjct: 133 HIDDSLR--DVHMPEMKRKFKPPLRPNTMYQTISALPKPRHDPTVLGALVMSRPKTWDPR 190
Query: 170 LHLHAIIQXQFLCRYLARHR 111
H+ +I FL ++L H+
Sbjct: 191 THVDVVID-PFLSKHLYSHQ 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,538
Number of Sequences: 5004
Number of extensions: 51636
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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