Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_A12
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch... 83 6e-17
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 29 0.83
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 1.1
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 28 1.9
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 3.4
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 4.4
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 27 4.4
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 26 7.8
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 7.8
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 26 7.8
>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 295
Score = 82.6 bits (195), Expect = 6e-17
Identities = 37/92 (40%), Positives = 55/92 (59%)
Frame = +1
Query: 547 NYKFTSYDVICLLISLCLGAWYLLKKHWIANNLFGIAFAINGVELLHLNNVVTGCILLCG 726
N K T + + S+ + +Y KHW+A+N+ A A N + ++ +++ TG +LL
Sbjct: 85 NPKTTFGKITATMSSIAIALFYFKTKHWMASNILAWALAANSISIMRIDSYNTGALLLGA 144
Query: 727 LFLYDIFWVFGTNVMVTVAKSFEAPIKLVFPQ 822
LF YDI++VFGT VMVTVA + P K V PQ
Sbjct: 145 LFFYDIYFVFGTEVMVTVATGIDIPAKYVLPQ 176
Score = 42.7 bits (96), Expect = 6e-05
Identities = 22/110 (20%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Frame = +1
Query: 262 QKKAGERHETMSNKDALMFPLVASCALFGLYIFFQFFSKEYINLLLTGYFFFLGVLALSH 441
Q++ E + ++ + A++FP+ L +Y+ ++ SKEYI L+L GY ++
Sbjct: 23 QEEEPEEKQLINKRLAVLFPIFGGVTLVLMYLALRYLSKEYIQLILQGYASLASIICFVR 82
Query: 442 LLSPIISF-LVPASIPNIPFHIHFTRGERDNKQDIINYKFTSYDVICLLI 588
+P +F + A++ +I + + + + +I+ + + + + I
Sbjct: 83 SFNPKTTFGKITATMSSIAIALFYFKTKHWMASNILAWALAANSISIMRI 132
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 29.1 bits (62), Expect = 0.83
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 8 LSKTIRRGKLSYKLYFCIIFYKKWQIWPQKY 100
L K + R K S +L FCI+F+K W+ +Y
Sbjct: 62 LEKELARFK-SARLNFCIVFFKNWEALYSQY 91
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.7 bits (61), Expect = 1.1
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = -2
Query: 839 PFTSKS*GNTSL-IGASKLLAT---VTMTLVPNTQKMSYRKSPQSRMQPVTTLFRCRSST 672
P TS + NTS I +S +L + +T + V NT R S + P+T+ SST
Sbjct: 551 PITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITRYSVLNSSTPITSSTVLNSST 610
Query: 671 PLMANAIPN 645
P+ ++++ N
Sbjct: 611 PITSSSVLN 619
Score = 27.5 bits (58), Expect = 2.5
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -2
Query: 839 PFTSKS*GNTSL-IGASKLLAT---VTMTLVPNTQKMSYRKSPQSRMQPVTTLFRCRSST 672
P TS + NTS I +S +L + +T + V NT S + P+T+ SST
Sbjct: 2387 PITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTSITSSSVLNSSTPITSSSVLNSST 2446
Query: 671 PLMANAIPN 645
P+ ++ + N
Sbjct: 2447 PITSSTVVN 2455
Score = 27.1 bits (57), Expect = 3.4
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = -2
Query: 839 PFTSKS*GNTSL-IGASKLLAT---VTMTLVPNTQKMSYRKSPQSRMQPVTTLFRCRSST 672
P TS + N+S I +S +L + +T + V NT + + P+T+L SST
Sbjct: 2519 PITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSLTALNSST 2578
Query: 671 PLMANAIPN 645
P+ ++++ N
Sbjct: 2579 PITSSSVLN 2587
Score = 27.1 bits (57), Expect = 3.4
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -2
Query: 839 PFTSKS*GNTSL-IGASKLLAT---VTMTLVPNTQKMSYRKSPQSRMQPVTTLFRCRSST 672
P TS + NTS I +S +L + +T + V NT + + P+T+ +ST
Sbjct: 3251 PITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTTLNTST 3310
Query: 671 PLMANAIPNRLLAI 630
P+ ++++ N AI
Sbjct: 3311 PITSSSVLNSSTAI 3324
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -2
Query: 839 PFTSKS*GNTSL-IGASKLLAT---VTMTLVPNTQKMSYRKSPQSRMQPVTTLFRCRSST 672
P TS + NTS I +S +L + +T + V NT S + P+T+ SST
Sbjct: 1295 PITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNSST 1354
Query: 671 PLMANAIPN 645
P+ ++ + N
Sbjct: 1355 PITSSTVVN 1363
Score = 26.2 bits (55), Expect = 5.9
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = -2
Query: 839 PFTSKS*GNTSL-IGASKLLAT---VTMTLVPNTQKMSYRKSPQSRMQPVTTLFRCRSST 672
P TS S N+S I +S +L + +T + V NT S + P+T+ SST
Sbjct: 755 PITSSSILNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVLNSST 814
Query: 671 PLMANAIPN 645
P+ ++++ N
Sbjct: 815 PITSSSVLN 823
Score = 26.2 bits (55), Expect = 5.9
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = -2
Query: 839 PFTSKS*GNTSL-IGASKLLAT---VTMTLVPNTQKMSYRKSPQSRMQPVTTLFRCRSST 672
P TS S NTS I +S +L + +T + V NT + + P+T+ +ST
Sbjct: 1991 PITSSSVLNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 2050
Query: 671 PLMANAIPN 645
P+ ++++ N
Sbjct: 2051 PITSSSVLN 2059
Score = 26.2 bits (55), Expect = 5.9
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -2
Query: 839 PFTSKS*GNTSL-IGASKLLAT---VTMTLVPNTQKMSYRKSPQSRMQPVTTLFRCRSST 672
P TS + NTS I +S +L + +T + V NT + + P+T+ SST
Sbjct: 2735 PITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTPITSSSVLNSST 2794
Query: 671 PLMANAIPN 645
P+ ++ + N
Sbjct: 2795 PITSSTVVN 2803
Score = 25.8 bits (54), Expect = 7.8
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = -2
Query: 839 PFTSKS*GNTSL-IGASKLLAT---VTMTLVPNTQKMSYRKSPQSRMQPVTTLFRCRSST 672
P TS S N+S I +S +L + +T + V NT S + P+T+ +ST
Sbjct: 1535 PITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVVNSSTPITSSTALNTST 1594
Query: 671 PLMANAIPN 645
P+ ++++ N
Sbjct: 1595 PITSSSVLN 1603
Score = 25.8 bits (54), Expect = 7.8
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = -2
Query: 839 PFTSKS*GNTSL-IGASKLL---ATVTMTLVPNTQKMSYRKSPQSRMQPVTTLFRCRSST 672
P TS + NTS I +S +L +T + + N+ S + P+T+ +ST
Sbjct: 3155 PITSSTTLNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTPITSSTTLNTST 3214
Query: 671 PLMANAIPNRLLAI 630
P+ ++++ N AI
Sbjct: 3215 PITSSSVLNSSTAI 3228
Score = 25.8 bits (54), Expect = 7.8
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -2
Query: 839 PFTSKS*GNTSL-IGASKLLAT---VTMTLVPNTQKMSYRKSPQSRMQPVTTLFRCRSST 672
P TS + NTS I +S +L + +T + V N+ + + P+T+ SST
Sbjct: 3383 PITSSTALNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSTVVNSST 3442
Query: 671 PLMANAIPNRLLAI 630
P+ ++++ N AI
Sbjct: 3443 PITSSSVLNSSTAI 3456
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 27.9 bits (59), Expect = 1.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 607 WYLLKKHWIANNLFGIAFAINGVELL 684
W++ KH ++FGI F + +EL+
Sbjct: 138 WHITSKHMFVGSIFGIIFMMMALELV 163
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 625 HWIANNLFGIAFAINGVELL 684
HW AN L G+++A+NG LL
Sbjct: 259 HWHANPLNGLSWALNGEYLL 278
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 4.4
Identities = 7/23 (30%), Positives = 18/23 (78%)
Frame = +1
Query: 493 PFHIHFTRGERDNKQDIINYKFT 561
PF+IH++R +R+ ++I+ +++
Sbjct: 928 PFNIHYSRNQREEAENILRRRYS 950
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 163 SIEGIAIAYLSLVIMAILPIFFGSFRS 243
+I+GI I Y ++ + I IFFG F S
Sbjct: 403 TIDGIYIIYFDMLALIIPTIFFGFFGS 429
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 88 ASEIPINIEDSVKETIQNVTEKPPSSIEGIAIAYLSLV 201
A + I ++ + E ++ E+PPS + I + LSL+
Sbjct: 79 AFRLQIASKEFLNELVRRFPERPPSRLNKIQVMILSLI 116
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 382 TPLRRIGRKY-IVRKEHMMQPTGTSEHLCWTLFHDA 278
T + G Y ++ K ++ P + LCWT+ +DA
Sbjct: 591 TQCKSCGPSYRLLPKIELLLPCSGRDDLCWTILNDA 626
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 630 PVLFKQVPSSKTERDEQTDHIIGCELVIDDILFVVSLTTG 511
P L + VP + +E+ ++ + DDI VVS TG
Sbjct: 440 PELERSVPKEEKTLEEKKPSMVHDSVTSDDIAVVVSRATG 479
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,542,511
Number of Sequences: 5004
Number of extensions: 75211
Number of successful extensions: 370
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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