Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_A12
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.67 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.2  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 263 CSFRYFTDRNEPKNIGKIAIITKLKYAIAIPSIL 162
           CSF Y TD NE     +I + T   ++  IP IL
Sbjct: 197 CSFDYLTDTNEI----RIFVATIFTFSYCIPMIL 226


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 180 DCIFKFSDNGYFTY 221
           DCIF  S+ GYF Y
Sbjct: 69  DCIFVTSEPGYFLY 82


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -1

Query: 774 HHDVGTEHPEDVVQEESAEQDAAGHHVVQMQKLHTVNGERYSKQ 643
           HH + T+HP    Q+   +  A   H +Q  + H +  ++   Q
Sbjct: 169 HHQMHTQHPHMQPQQGQHQSQAQQQH-LQAHEQHMMYQQQQQSQ 211


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 212 IAIITKLKYAIAIPSILEGGFSVTFCIVSLTLSS---MFIGISEAISAISY 69
           IAI+  + Y I +  I EGG  V   + S  +S    +F+   E I AIS+
Sbjct: 419 IAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECI-AISW 468


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 212 IAIITKLKYAIAIPSILEGGFSVTFCIVSLTLSS---MFIGISEAISAISY 69
           IAI+  + Y I +  I EGG  V   + S  +S    +F+   E I AIS+
Sbjct: 472 IAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECI-AISW 521


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -2

Query: 728 SPQSRMQPVTTLFRCRSSTPLMANAIPNRLLAIQCFLSKYQAPR 597
           SP+S     +   +C S+T + A +       +QC  S Y   R
Sbjct: 737 SPRSPNASPSPAEQCASTTTITARSPQGSQGLLQCATSNYSTTR 780


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,002
Number of Sequences: 438
Number of extensions: 5707
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)