Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_A11
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0647 + 21487932-21488011,21488454-21488472,21488842-21489507     28   7.4  
08_01_0507 - 4415086-4415724,4416094-4416112,4416555-4416634           28   7.4  
01_06_1205 + 35406456-35408072                                         28   9.8  

>12_02_0647 + 21487932-21488011,21488454-21488472,21488842-21489507
          Length = 254

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 311 LFFISFKANCGRFHVRLYFTG 249
           +FF+++ A CGRF  +++ TG
Sbjct: 185 VFFVTYAARCGRFSAKVHPTG 205


>08_01_0507 - 4415086-4415724,4416094-4416112,4416555-4416634
          Length = 245

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 311 LFFISFKANCGRFHVRLYFTG 249
           +FF+++ A CGRF  +++ TG
Sbjct: 185 VFFVTYAARCGRFSAKVHPTG 205


>01_06_1205 + 35406456-35408072
          Length = 538

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -2

Query: 709 SKV-SVTPITCVFIVRNVIFYITKIS 635
           SKV S  P++CVF+V N I+ I K++
Sbjct: 381 SKVYSHAPLSCVFLVNNGIYIIKKVN 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,593,449
Number of Sequences: 37544
Number of extensions: 370132
Number of successful extensions: 808
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)