Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_A11
(791 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022976-7|AAC69086.1| 441|Caenorhabditis elegans Hypothetical ... 30 2.2
Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 6.7
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 6.7
AC024842-4|AAY43991.1| 703|Caenorhabditis elegans Hypothetical ... 28 6.7
AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical ... 28 6.7
AC024842-2|ABA00150.1| 604|Caenorhabditis elegans Hypothetical ... 28 6.7
AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical ... 28 6.7
AL031633-6|CAA21014.3| 225|Caenorhabditis elegans Hypothetical ... 28 8.8
>AF022976-7|AAC69086.1| 441|Caenorhabditis elegans Hypothetical
protein R11G11.12 protein.
Length = 441
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = -1
Query: 551 CTLKYCYYISLMS*LTSNFMFHRKLCCEVTAKSSFKFKAVHTYHDKQLLHFQ*INKIYKY 372
C L+ C + + TSNF +HR + ++SS FK + H KQ I+KI K
Sbjct: 42 CRLRKCLEVGME---TSNFQYHRDSLHD--SESSSVFKKLEAKHSKQT-----ISKIPKS 91
Query: 371 LLCF 360
CF
Sbjct: 92 FECF 95
>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical protein
C44B9.4 protein.
Length = 1150
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 349 IAPVIVPCRCMRHCFLSVSRQTVGGFMFGC 260
I P + CRC +H L +SRQ G + C
Sbjct: 1098 IIPPHIKCRCQKHSDLQISRQESTGELVRC 1127
>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical
protein W08D2.5 protein.
Length = 1256
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 90 IKMENDLDKVVEEIMSMPNVNGCLIADPQGLCLASKGAAHVDSA--GIIVAISEQACKIQ 263
+ + DL K + S+ +NG L DP L L K ++ G I +++ +Q
Sbjct: 517 LPFDGDLVKAIATCHSLTRINGVLHGDPLDLILFQKTGWTMEEGIEGDIEEETQRFDNVQ 576
Query: 264 PNMKPPT 284
P++ PT
Sbjct: 577 PSIIKPT 583
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = -2
Query: 313 HCFLSVSRQTVGGFMFGCILQACSDMATIIPAESTCAAPFDAKHSPCGSAIRQP 152
HC VSR+T F F C C + ++ C D S C SA P
Sbjct: 3950 HCE-DVSRRTCSPFEFECANSVCIPRKFMCDGDNDCGDNSDETSSECRSAQCDP 4002
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = -2
Query: 313 HCFLSVSRQTVGGFMFGCILQACSDMATIIPAESTCAAPFDAKHSPCGSAIRQP 152
HC VSR+T F F C C + ++ C D S C SA P
Sbjct: 3950 HCE-DVSRRTCSPFEFECANSVCIPRKFMCDGDNDCGDNSDETSSECRSAQCDP 4002
>AC024842-4|AAY43991.1| 703|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2c protein.
Length = 703
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 311 VPHTTTWHDHRSDF*IENIEGTCIFYLFIENVIIVY 418
+P T HD+ D ++++GT IFY+ + + I++Y
Sbjct: 576 IPFMPTHHDNDEDR--KSLQGTAIFYVSLFHYIVLY 609
>AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2b protein.
Length = 1111
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 311 VPHTTTWHDHRSDF*IENIEGTCIFYLFIENVIIVY 418
+P T HD+ D ++++GT IFY+ + + I++Y
Sbjct: 984 IPFMPTHHDNDEDR--KSLQGTAIFYVSLFHYIVLY 1017
>AC024842-2|ABA00150.1| 604|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2d protein.
Length = 604
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 311 VPHTTTWHDHRSDF*IENIEGTCIFYLFIENVIIVY 418
+P T HD+ D ++++GT IFY+ + + I++Y
Sbjct: 477 IPFMPTHHDNDEDR--KSLQGTAIFYVSLFHYIVLY 510
>AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2a protein.
Length = 1127
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 311 VPHTTTWHDHRSDF*IENIEGTCIFYLFIENVIIVY 418
+P T HD+ D ++++GT IFY+ + + I++Y
Sbjct: 1000 IPFMPTHHDNDEDR--KSLQGTAIFYVSLFHYIVLY 1033
>AL031633-6|CAA21014.3| 225|Caenorhabditis elegans Hypothetical
protein Y39A1A.8 protein.
Length = 225
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = -2
Query: 268 FGCILQACSDMATIIPAESTCAAPFDAKHSPCGSAIRQPLTLGIDMISSTTLSRSFSIFI 89
F C LQ C + T +E T APF CG I+ L D+I T F+
Sbjct: 25 FLCGLQICHRIKTRGSSEGTSPAPFLLSFLSCGLFIQYGLLKDDDVI---TYCNGIGCFL 81
Query: 88 KQIYI 74
+ Y+
Sbjct: 82 QACYL 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,787,258
Number of Sequences: 27780
Number of extensions: 369194
Number of successful extensions: 725
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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