Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_A08
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 133 2e-32
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me... 31 0.24
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.98
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 28 1.7
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 2.3
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 3.0
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 27 4.0
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 27 4.0
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 26 5.2
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 6.9
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 26 6.9
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 6.9
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 6.9
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 26 6.9
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 25 9.2
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 9.2
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 133 bits (322), Expect = 2e-32
Identities = 72/160 (45%), Positives = 94/160 (58%)
Frame = +2
Query: 299 VVAAHYNHLEEKGLKERYNSPIFHLRNFNNWVKSVLIQEFTDKIREKDYGRPLRILDICC 478
VV +HYN + G K+R SPI L+ FNNW+KSVLIQ+F DY P+ +LD+ C
Sbjct: 93 VVRSHYNARPDLGYKKRQFSPIIQLKRFNNWIKSVLIQKFAP--HASDY--PILVLDMGC 148
Query: 479 GKGGDLSKWQKVRPEHAIFADIAEVSVQQCETRYEELRRRCGRLFSAEFIATDCTKDTLR 658
GKGGDL KW K + I DIAEVSV Q + RY E+ F A F A DC ++
Sbjct: 149 GKGGDLIKWDKAGIDGYIGIDIAEVSVNQAKKRYREMHAS----FDALFYAGDCFSSSIN 204
Query: 659 DKYKDPSISFDIVSCQFGLHYSFESLLQARRMLTXISECL 778
+ FD+VS QF +HY+FES + R +L +S+CL
Sbjct: 205 ELLPPDQRKFDVVSLQFCMHYAFESEEKVRVLLGNVSKCL 244
>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.24
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 389 WVKSVLIQEFTDKIREKDYGRPLRILDICCGKG 487
W ++ DK+ + +PL+ILD+C G G
Sbjct: 96 WETEEWVERVVDKLNRLERLKPLKILDLCTGSG 128
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 28.7 bits (61), Expect = 0.98
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 212 LQKQTENVDENKTNANNSNHEPPPK-KHSSVVAAHYNHLEEKGLKERYNSPIFHLRNFNN 388
+Q+Q E + K ++ E + +H + +E L+E Y + R F N
Sbjct: 37 IQRQEEQLALRKKAIEDARQEVLQQIQHRKFRQYLHEREQEARLQEYYLEQLQERRAFEN 96
Query: 389 WVKSVLIQEFTDKIREKDYGR 451
V++++ + F D+ RE+ + R
Sbjct: 97 VVRTIIRKRFEDEERERAHRR 117
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 224 TENVDENKTNANNSNHEPPPKKHSSVVAAHYNHLEEKGLKE 346
T+N E+ TN NN N E K +S V ++ +H E+ G ++
Sbjct: 42 TKNKLESGTNDNNKNKEDLSKLYSDVTTSNTSH-EKDGSED 81
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 224 TENVDENKTNANNSNHEPPPKKH 292
TEN D+N N NN+++ P +K+
Sbjct: 725 TENDDDNNINNNNNDNNTPKRKN 747
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 358 PNISLKEFQQLGEKCSN 408
P IS KE +LGEKC+N
Sbjct: 1048 PKISTKEDTKLGEKCAN 1064
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 431 REKDYGRPLRILDICCGKGGDLSKWQKVRPEHAIF 535
++K + R L +LD+ GK + K +K PE +I+
Sbjct: 259 QKKQFIRNLALLDMAVGKQRSVRKEKKRNPEESIY 293
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 307 STLQPSGRKRSKRTIQFPNISLKEFQQ 387
S L + R SKR + PN LKEF Q
Sbjct: 265 SALSETFRPFSKRELNLPNTFLKEFDQ 291
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 5.2
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +2
Query: 311 HYNHLEEKGLKERYNSPIFHLRNFNNWVKSVLIQEFTDKIREKDYGRPLRILDICCGKGG 490
H+N L + S + HL N S + T+ RE++ +ILDI CG GG
Sbjct: 37 HFNELAKTWWDWDGGSRLLHLMN------STRLDFMTEVFRERNCFSGKKILDIGCG-GG 89
Query: 491 DLSK 502
LS+
Sbjct: 90 ILSE 93
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 209 SLQKQTENVDENKTNANNSNHEPPPKKHSSVVAAHYNHLEEKGLKE 346
+ QK+ NVD N NN + +K S++ H L L+E
Sbjct: 318 TFQKENANVDANHATENNLEGQ-ATQKSVSILKGHNKALSNVSLQE 362
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 326 EEKGLKERYNSPIFHLRNFNNWVKSVLIQEFTDKIREKD 442
+E G+K NS I + + WVK +Q+ I E++
Sbjct: 304 KELGIKHTPNSKIINQISLQQWVKQKKVQDAWRTIAERE 342
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = +2
Query: 185 SEFGDSELSLQKQTENVDENKTNANNSNHEPPPKKHSSVVAAHYNHLEEKGLKERYNSPI 364
S G S + N + + N+N SN+E K SS+ + L G N+
Sbjct: 511 SFMGSSSNNSNSSNNNSNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNS- 569
Query: 365 FHLRNFNN 388
+ N+NN
Sbjct: 570 -NSGNYNN 576
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 25 SLNSHNYSLFHAINHFKYF 81
S NSHN +LFH FK F
Sbjct: 63 SSNSHNVNLFHLSPEFKRF 81
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 482 KGGDLSKWQKVRPEHAIFADI 544
K D+ +WQ V P H F D+
Sbjct: 402 KHSDIQRWQNVLPIHGSFLDL 422
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +2
Query: 581 EELRRRCGRLFSAEFIATDCTKDTLRDKYKDPSISFDIVSCQFGLHYSFESLLQARRML 757
E ++ C ++FS F+ C+ +K +S V C +G H+ E ++ M+
Sbjct: 19 ENYQKICTQIFSCHFVPRRCSTCKRINKRSIRCLSCHSVGCLWG-HHGEEHAMEHTHMI 76
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = +2
Query: 143 IIFPKVSRQEFEEMSEFGDSELSLQKQTENVDENKTNANNSNHEPPPKKHSSVVAAHYNH 322
I F K+ + + L +++E ENK N +K+ V+AAH
Sbjct: 480 ITFGKLKNHSQSQKDYNSSTSLDSSEESEVDVENKQNVRTKYDRIFERKNQDVLAAHRQR 539
Query: 323 LEE 331
L E
Sbjct: 540 LVE 542
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,963
Number of Sequences: 5004
Number of extensions: 63425
Number of successful extensions: 248
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -