Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_A08
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0538 - 4670159-4670251,4670332-4670393,4670476-4670599,467...   121   6e-28
09_04_0543 - 18442571-18443111,18443232-18443426,18443507-184440...    32   0.44 
01_06_0521 + 30001662-30001752,30001883-30001999,30002099-300022...    30   1.8  
11_01_0404 + 3071412-3071464,3073572-3074970                           30   2.4  
06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174...    30   2.4  
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137...    28   7.2  

>08_01_0538 -
           4670159-4670251,4670332-4670393,4670476-4670599,
           4670797-4670859,4671483-4671533,4671627-4671691,
           4671797-4671935,4672332-4672388,4672729-4672827,
           4673266-4673337,4673426-4673494,4673617-4673762,
           4673881-4674157
          Length = 438

 Score =  121 bits (292), Expect = 6e-28
 Identities = 69/162 (42%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
 Frame = +2

Query: 302 VAAHYNHLEEKGLKERYNSPIFHLRNFNNWVKSVLIQEFTDKIREKDYGRPLRILDICCG 481
           VA HY+    + L+ER NSPI HL+  NNW+KSVLIQ +       D      +LD+ CG
Sbjct: 112 VADHYSARSNQTLEERENSPIIHLKKLNNWIKSVLIQLYA---HPGDC-----VLDLACG 163

Query: 482 KGGDLSKWQKVRPEHAIFADIAEVSVQQCETRYE---ELRRRCGRLFSAEFIATDCTKDT 652
           KGGDL KW K +  + +  DIAE S++ C TRY    + +RR    F A  I  DC +  
Sbjct: 164 KGGDLIKWDKAKVGYYVGVDIAEGSIKDCMTRYNGDTDQQRRKKFSFPARLICADCYEAR 223

Query: 653 LRDKYKDPSISFDIVSCQFGLHYSFESLLQARRMLTXISECL 778
           L D++      FDI SCQF LHYS+ +  +AR+ L  +S  L
Sbjct: 224 L-DEHLYEDAPFDICSCQFALHYSWSTEARARQALANVSALL 264


>09_04_0543 -
           18442571-18443111,18443232-18443426,18443507-18444045,
           18444205-18444375,18444794-18445219
          Length = 623

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 23/84 (27%), Positives = 37/84 (44%)
 Frame = +2

Query: 185 SEFGDSELSLQKQTENVDENKTNANNSNHEPPPKKHSSVVAAHYNHLEEKGLKERYNSPI 364
           S FGD+  S ++  E      TN N  N  PPP   S V  +H N  E   L+ R +   
Sbjct: 243 SMFGDNHSSDEQDDE------TNQNGENSMPPPNHRSGVPLSHTNDPEVNVLENRGSQTC 296

Query: 365 FHLRNFNNWVKSVLIQEFTDKIRE 436
            +  +  +  K+  +Q+   ++ E
Sbjct: 297 HNSASLWDNAKNDCLQDVQSEVIE 320


>01_06_0521 +
           30001662-30001752,30001883-30001999,30002099-30002229,
           30002320-30002370,30002639-30002689,30002864-30003007,
           30003082-30003224,30003376-30003448,30003540-30003635,
           30003737-30003835,30003905-30003958,30004032-30004155,
           30004420-30004544,30004720-30004842,30004948-30005028
          Length = 500

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 575 RYEELRRRCGRLFSAEFIATDCTKDTL--RDKYKDPSISFDIVSCQF 709
           R   LRRR G   S+     D  KD L    +  DP    DIVSC F
Sbjct: 55  RVGRLRRRAGAASSSVASVEDAKKDVLVALSQIIDPDFGTDIVSCGF 101


>11_01_0404 + 3071412-3071464,3073572-3074970
          Length = 483

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
 Frame = +2

Query: 257 NNSNHEPPPKKHSSVVAAHYNHLEEKGLKERYNSPIFHLRNFNNWVKSVLIQ-EFTDKIR 433
           ++ +H    K H S    H  + +    K++  SP   ++  ++ VK ++    +T +  
Sbjct: 123 HHHHHRHHSKNHGSDEEEHDMNEDAADGKDKKGSPWHRMKWTDSMVKLLITAVSYTGEDP 182

Query: 434 EKDYGRPLRILDICCGKGGDLSKWQKVRPEHAIFADIAEVSVQQCETRYEELRRRCGRL 610
             D G   R   +   KG    KW+ +     +      VS QQCE ++ +L +R  RL
Sbjct: 183 GADLGGGRRNYSMMQKKG----KWKAI--SKVMGERGCHVSPQQCEDKFNDLNKRYKRL 235


>06_01_1173 +
           10014391-10014678,10015478-10017245,10017333-10017436,
           10017632-10017706,10017887-10017918,10019396-10019482,
           10020848-10021294,10021477-10021630,10022203-10022329,
           10022547-10022632,10022719-10022790,10023083-10023286,
           10023732-10024049
          Length = 1253

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 254 ANNSNHEPPPKKHSSVVAAHYNHLEE 331
           ANN +H PPP   S +   HY  L++
Sbjct: 913 ANNGSHSPPPVSVSGIPKYHYKDLQK 938


>02_04_0490 -
           23411742-23412944,23413071-23413595,23413666-23413747,
           23413841-23414050,23414371-23414523,23415335-23415447,
           23415476-23415622
          Length = 810

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 500 KWQKVRPEHAIFADIAEVSVQQCETRY--EELRRRCGRLFSAEFIATDCTKDTL 655
           KW+KV  E + F D  ++   + E  Y   + RR   R+ +  +   DC  D +
Sbjct: 581 KWEKVLDEVSDFCDKYDIVKLEMEDTYIDPKKRRHKSRITNKHYYQVDCFNDVI 634


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,937,794
Number of Sequences: 37544
Number of extensions: 355079
Number of successful extensions: 1126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)