Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_A06
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 76 2e-14
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 64 1e-10
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 64 1e-10
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 58 5e-09
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z70307-7|CAA94336.2| 531|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z35719-2|CAA84799.2| 715|Caenorhabditis elegans Hypothetical pr... 28 7.4
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 76.2 bits (179), Expect = 2e-14
Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 1/160 (0%)
Frame = -3
Query: 487 VTPMEVKDLIKDLRPRKAPGFDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEA 308
+T +E+ ++ + P A G DGI+ I+ LP+ LA ++N +++ I P WK+A
Sbjct: 328 ITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKA 387
Query: 307 DVIGIHKPGKPKNDPTSYRPISLLMSXXXXXXXXXXXXXRDFVSSKGILIDEQFGFRTNH 128
+VI I KP K +SYRPISLL ++ + S Q GF+ H
Sbjct: 388 NVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIESPA----HQHGFKPEH 443
Query: 127 SCVQQVHRLTEHILVGLNRPKPLYTGAL-FFDVAKAFDKV 11
S V ++T I+ GLN P + D+ AFDKV
Sbjct: 444 STTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAAFDKV 483
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 63.7 bits (148), Expect = 1e-10
Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 2/190 (1%)
Frame = -3
Query: 574 QSVDPVHVELVDSEVE--RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGFDGISNRVI 401
Q ++ + EL S V + +S+P + PP P E++ +++ KA G D IS +
Sbjct: 516 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 575
Query: 400 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNDPTSYRPISLLMSXXX 221
K +I ++ FN + + P WK + I K G +N +YRPI LL
Sbjct: 576 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 634
Query: 220 XXXXXXXXXXRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALF 41
R + + EQ GFR + S + +H L + VG PL +F
Sbjct: 635 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPL--TLVF 690
Query: 40 FDVAKAFDKV 11
D KAFD V
Sbjct: 691 IDFKKAFDSV 700
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 63.7 bits (148), Expect = 1e-10
Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 2/190 (1%)
Frame = -3
Query: 574 QSVDPVHVELVDSEVE--RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGFDGISNRVI 401
Q ++ + EL S V + +S+P + PP P E++ +++ KA G D IS +
Sbjct: 255 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 314
Query: 400 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNDPTSYRPISLLMSXXX 221
K +I ++ FN + + P WK + I K G +N +YRPI LL
Sbjct: 315 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 373
Query: 220 XXXXXXXXXXRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALF 41
R + + EQ GFR + S + +H L + VG PL +F
Sbjct: 374 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPL--TLVF 429
Query: 40 FDVAKAFDKV 11
D KAFD V
Sbjct: 430 IDFKKAFDSV 439
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 58.4 bits (135), Expect = 5e-09
Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 2/190 (1%)
Frame = -3
Query: 574 QSVDPVHVELVDSEVE--RRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGFDGISNRVI 401
Q ++ + E S V + +S+P + PP P +++ ++ KA G D IS +
Sbjct: 345 QEIEKFYTEFFKSAVSNSQASSIPTTATPPPFLPEKIRYALRSFPNGKAAGQDKISADFL 404
Query: 400 KLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNDPTSYRPISLLMSXXX 221
K +I ++ FN + + P WK + I K G +N +YRPI LL
Sbjct: 405 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 463
Query: 220 XXXXXXXXXXRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALF 41
R + + EQ GFR + S + +H L + VG PL +F
Sbjct: 464 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPL--TLVF 519
Query: 40 FDVAKAFDKV 11
D KAFD V
Sbjct: 520 IDFKKAFDTV 529
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical
protein C41A3.1 protein.
Length = 7829
Score = 31.9 bits (69), Expect = 0.46
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = -3
Query: 670 LVGPSGRLAAFDDDEKAELXADTLQTQCTPSTQSVDP----VHVELVDSEVERRASLPPS 503
+V P+GRLAAFD + A++ S Q + +H E V S P
Sbjct: 202 MVSPNGRLAAFDRSANGFVRAESFAVAVLCSKQFAEENNLLIHCECVGSAFNSDGKTPSL 261
Query: 502 DALPPVTPMEVK 467
A P++ EV+
Sbjct: 262 TAPNPISQYEVQ 273
>Z70307-7|CAA94336.2| 531|Caenorhabditis elegans Hypothetical
protein C39E9.7 protein.
Length = 531
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/68 (32%), Positives = 28/68 (41%)
Frame = -1
Query: 354 MPLWRTVSFPRCGKKRTLSAYINPVNQKMIRRATARLASSCL*ANCMSVCSTNASETSSH 175
M + T++F CG + NPVN K I LASS L + N S H
Sbjct: 385 MRFFNTIAFGTCGIFLFTLGFFNPVNHKYIVTVMYILASSLLGCSYAGHLRMNQLR-SGH 443
Query: 174 PRAFLSMN 151
FL +N
Sbjct: 444 LHLFLLVN 451
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 637 DDDEKAELXADTLQTQCTP---STQSVDPVHVELVDSEVERRASLPPSDALPP 488
D+DE AE A +P S++S P + VD +E + PP PP
Sbjct: 431 DEDEPAEPIAQKAAAPVSPNPASSRSASPEPAQQVDELLESEEAAPPPPPPPP 483
>Z35719-2|CAA84799.2| 715|Caenorhabditis elegans Hypothetical
protein F17C8.3 protein.
Length = 715
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 390 GRSLITRLDIPSKPGALRGRRSLIKSLTSI 479
G +ITR + P+KPGA+ G+ + L+SI
Sbjct: 673 GFEVITRRNNPAKPGAVTGQLTYYSFLSSI 702
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,007,623
Number of Sequences: 27780
Number of extensions: 337817
Number of successful extensions: 934
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -