Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_A05
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi...    48   2e-06
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    27   2.1  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.8  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    27   3.8  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   5.0  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   6.6  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    26   6.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   6.6  

>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
 Frame = +2

Query: 86  IRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVP 265
           +R + IKT VVKRI              + R+Q   D G+D   I  Q+ VL++ L  +P
Sbjct: 5   VRSLVIKTNVVKRIIKDVELAHIDINEAEKRVQSKIDNGEDSAEIEHQKFVLKKHLEALP 64

Query: 266 DCQRRLIKAYTDLK-----TTLETEQDLKEHEEYI-TAEQVLKDAEPQLP 397
           D   RL  A  DL+     +  E   +L++  EY+  A++V++  +   P
Sbjct: 65  DALVRLRNATNDLESISSDSAYEGTPELEQANEYLEKAKEVIEKEQTNFP 114


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +2

Query: 245 ESLMMVPDCQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVLKDAEPQLPAIES*LSPF 424
           E+L  VPD    LI+A  +LKT  + E   KE EE   + Q  +  E ++  +   L  +
Sbjct: 98  ETLGEVPDPYPLLIEAANNLKTQKQIEDLKKEKEEMEGSLQGKEKLEREVENLRKELDKY 157

Query: 425 YKLI 436
             L+
Sbjct: 158 KDLV 161


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 283 NQSIYRSQNYFRNRTGPQRTRGIHY 357
           +Q+I+++  Y  ++TGP R R +HY
Sbjct: 118 HQAIWQTLRYAYSQTGPLRHRRLHY 142


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +2

Query: 209 EHNIRKQEEVLQESL-MMVPDCQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVLKDAE 385
           E  + K  ++ +E L + + DC++++++ +  L  + E  +      E I  EQVL   E
Sbjct: 302 ETELEKLHQLKKEHLPIFLEDCRQQILQLWDSLFYSEEQRKSFTPMYEDIITEQVLTAHE 361

Query: 386 PQLPAIES*LS 418
             +  +E+ +S
Sbjct: 362 NYIKQLEAEVS 372


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 587 VSPQQGLHRRPRDQIRAPNYMPPQSPAYFTATPSL 691
           +SP Q  +         P   PP SP++ TAT SL
Sbjct: 381 ISPNQTFNPVKSSVKALPTLEPPSSPSHATATSSL 415


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 629 IRAPNYMPPQSPAYFTATPSLTPM 700
           + A  Y PP++P   T + SLTP+
Sbjct: 341 VNASTYNPPRAPLQRTPSGSLTPL 364


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 167 QKNRIQRIK-DEGQDEHNIRKQEEVLQESLMMVPDCQRRLIKAYTDLKTTLETEQDLKEH 343
           QK+  +R K D+G +E N  +QE++L   L  + D      K  T  K+++++  + KE+
Sbjct: 74  QKHATERQKLDKGDEETNETQQEDLLNTLLQQMED-----TKITTAEKSSVQSSLNTKEN 128


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 164 LQKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLIKAYTDLKTTLETEQDLKE 340
           LQ+ +++R   E Q E  +  +   L+  L+ + +  + LIK   D+ +  +  Q LKE
Sbjct: 639 LQQLQLERANFE-QKESTLSDENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQTLKE 696


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,772
Number of Sequences: 5004
Number of extensions: 37595
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)