Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_F_A05
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1220 + 35021495-35021647,35022819-35022905,35022988-35023086 66 3e-11
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 1.3
05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16... 31 1.3
04_04_0352 + 24619621-24619757,24620102-24620411,24621022-246214... 30 2.2
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 29 3.0
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007 29 3.9
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 29 3.9
04_04_1411 + 33375988-33376045,33376161-33376551,33376830-333769... 29 5.2
08_01_0698 + 6162127-6162160,6162317-6162512,6162654-6162699 28 6.9
07_03_0940 + 22762176-22762345,22763207-22763252 28 6.9
>02_05_1220 + 35021495-35021647,35022819-35022905,35022988-35023086
Length = 112
Score = 66.1 bits (154), Expect = 3e-11
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Frame = +2
Query: 86 IRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVP 265
+R +KIKT KRI + + +K++G D +++++QE VL ES MMVP
Sbjct: 4 LRNLKIKTSTCKRIVKELRSYEKEVEKEAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
Query: 266 DCQRRLIKAYTDLKTTL-ETEQDLKEHEEYITAEQVLKDAE 385
DC +RL A DLK TL E ++ ++ E AE + + E
Sbjct: 64 DCHKRLETALADLKATLAELKESNEQGAEIGEAESTITEVE 104
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 224 KQEEVLQESLMMVPDCQRRLIKAYTDL 304
KQ EV L+ V DCQRR I Y+D+
Sbjct: 163 KQFEVFDIELLAVQDCQRRTIAFYSDV 189
>05_01_0024 -
164618-165139,166884-166949,167046-167216,167321-167422,
167538-167600,167679-167825,168234-168359,168742-168921,
169183-169322,169688-169861,170096-170123
Length = 572
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 572 IQQAQVSPQQGLHRRPRDQIRAPNYMPPQSPAYFTATPSLTP 697
++Q Q PQ P + +AP P Q P Y TP+ P
Sbjct: 428 VKQHQQEPQDNSRELPASEPKAPPGWPLQPPMYLPVTPAPPP 469
>04_04_0352 +
24619621-24619757,24620102-24620411,24621022-24621429,
24621773-24622357
Length = 479
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 531 PQHKSRHQNKCHQEYNKHK-FRHSKDYIDGHEIKFELQIICHLSHQHTSR 677
P H+ R +C Y HK F + G + + LQI C + HTSR
Sbjct: 33 PPHELRAPRRCSPSYTSHKVFHRDVGFFSGWQ-SYNLQIYCCI---HTSR 78
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 236 VLQESLMMVPDCQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVLKDAE 385
VL + L + D + RLI YT++K E + H + +T +L D +
Sbjct: 28 VLHQKLCLSIDMENRLIYGYTEIKVQAEND-TFALHADNMTIRNILVDGQ 76
>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
Length = 952
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 272 QRRLIKAYTDLKTTLE-TEQDLKEHEEYITAEQVLKDAEPQ 391
+RR+ K Y D K + E D+K+ + A +KD EP+
Sbjct: 284 RRRVRKEYDDFKARINGLEHDIKQRSDSYNAAAGVKDGEPR 324
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 227 QEEVLQESLMMVPDCQRRLIKAYTDLKTTLETEQDLKEHEEYIT--AEQVLKDA 382
+EE L + + +CQ L K +L+ E + +L++ + +T AE+ L DA
Sbjct: 1552 EEEALASAQEEIKECQESLSKCEEELRRIQEKKMELQKEVDRLTELAERALLDA 1605
>04_04_1411 +
33375988-33376045,33376161-33376551,33376830-33376912,
33377209-33377297,33377481-33377554,33377768-33377818,
33377861-33377900,33378567-33378593,33379191-33379874
Length = 498
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 492 TNMHSLMSLHHRQPQHKSRHQNKCHQEYNKHKFRHSKD 605
+N ++ +SLH +Q QH+ +HQ + Q+ + + S +
Sbjct: 417 SNCYTNVSLHEQQQQHQHQHQQEQQQDQQDDQSQSSNN 454
>08_01_0698 + 6162127-6162160,6162317-6162512,6162654-6162699
Length = 91
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 600 CCGETCACCILGDICF 553
CC C CC+L D+CF
Sbjct: 77 CCAALCCCCLL-DMCF 91
>07_03_0940 + 22762176-22762345,22763207-22763252
Length = 71
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 600 CCGETCACCILGDICF 553
CC C CC+L D+CF
Sbjct: 57 CCAALCCCCLL-DMCF 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,770
Number of Sequences: 37544
Number of extensions: 247817
Number of successful extensions: 906
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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