Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_F_A05
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    34   0.093
U58755-16|AAB00705.2|  512|Caenorhabditis elegans Hypothetical p...    31   0.87 
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    30   1.5  
X70830-1|CAA50178.1|  534|Caenorhabditis elegans Cytoplasmic int...    30   2.0  
AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical pr...    28   8.1  
L14324-4|AAA28184.1|  159|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 16/79 (20%), Positives = 45/79 (56%)
 Frame = +2

Query: 167  QKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLIKAYTDLKTTLETEQDLKEHE 346
            +K ++++I++E +DE  + ++EE+ +E   +  + +  + + + +    L+ E+   E E
Sbjct: 1034 RKRKLEQIQEEDEDEEILDEEEELFEEEEEVDEEYEGEVEEVHRESSEELDDEE---EEE 1090

Query: 347  EYITAEQVLKDAEPQLPAI 403
            E +  E++ +D E +  ++
Sbjct: 1091 EVMPEEEIEEDQEDEQESV 1109


>U58755-16|AAB00705.2|  512|Caenorhabditis elegans Hypothetical
           protein C34D4.1 protein.
          Length = 512

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 18/74 (24%), Positives = 39/74 (52%)
 Frame = +2

Query: 164 LQKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLIKAYTDLKTTLETEQDLKEH 343
           L+  + Q+ + + ++E     Q++ L+E+       +R   K+ TD++  LE E+D K  
Sbjct: 320 LKSKKTQQERKKSENEKTT--QDQKLKEAEKNYEMWKRERSKSVTDIRKKLEQEEDKKRK 377

Query: 344 EEYITAEQVLKDAE 385
           +E     + +K+A+
Sbjct: 378 KEEEAKNEKIKEAQ 391


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
 Frame = +2

Query: 38  KKKTRSIIQQ-EMADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEH 214
           +KKT+ I  + ++A  + ++IK+K  V++              L+ +  Q  KDE   + 
Sbjct: 454 RKKTKIIYDKVQLAKKKNKEIKLKKKVLEE-EEKTEKMMENMTLENSEDQSKKDEATVDA 512

Query: 215 NIRKQEEVLQESLMMVPDCQRRLIKAYTDLKTTLETEQDLKE 340
            IR +E       + V D Q+RLI A    +     E   K+
Sbjct: 513 EIRTEESDNPFKRIPVIDAQKRLIDAIFQRQIDCNIEDSEKQ 554


>X70830-1|CAA50178.1|  534|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 534

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +2

Query: 185 RIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLIKAYTDLKTTLETEQDLKEHEEYITA- 361
           R KDE   EH IR++ +  +E +  +P     +IK   +L +T  T++    H+  +++ 
Sbjct: 466 RNKDENVGEHKIRRKLDGRREIVYSIP--ANVVIKPGKNLTSTPVTKEASTTHQSLLSSM 523

Query: 362 EQVLKDAEPQL 394
           E+   ++EP L
Sbjct: 524 ERTPGESEPML 534


>AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.5 protein.
          Length = 99

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 624 SRGRRCSPCCGETCAC 577
           SR  RCSPCC   C+C
Sbjct: 82  SRCSRCSPCCSGCCSC 97


>Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical
           protein C09G5.8 protein.
          Length = 1531

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = +2

Query: 236 VLQESLMMVPDCQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVLKDAEPQLPAIE 406
           +LQE   +V     RL+       T     + ++E ++ +  E++LK+ E ++   E
Sbjct: 474 MLQEECDLVKKANERLVHQSLSKSTEYGARESIEEKKKIVELEELLKETEKRIKESE 530


>Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical
           protein C09G5.8 protein.
          Length = 1531

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = +2

Query: 236 VLQESLMMVPDCQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVLKDAEPQLPAIE 406
           +LQE   +V     RL+       T     + ++E ++ +  E++LK+ E ++   E
Sbjct: 474 MLQEECDLVKKANERLVHQSLSKSTEYGARESIEEKKKIVELEELLKETEKRIKESE 530


>L14324-4|AAA28184.1|  159|Caenorhabditis elegans Hypothetical
           protein ZK112.5 protein.
          Length = 159

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 263 PDCQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVL-KDAEPQLPAIES*LSPFY 427
           P  +  L+++    K  LET    K HE ++  E VL  DA   L  I + L P+Y
Sbjct: 30  PVSKAELLESLESRKLGLETRVLDKYHENHVAFENVLVLDAPQDLETIVNLLLPWY 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,382,400
Number of Sequences: 27780
Number of extensions: 217885
Number of successful extensions: 970
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)