Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_P23
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0345 + 2579602-2579836,2581262-2581484,2582822-2583173,258...    28   4.8  
12_01_0368 + 2815424-2815658,2816898-2817120,2818329-2818680,281...    28   6.3  

>11_01_0345 +
           2579602-2579836,2581262-2581484,2582822-2583173,
           2583894-2584125,2584683-2585266
          Length = 541

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 477 ISLCFSLSTKKSTALNMTISAVVIISFL 560
           IS+C   STK+S+ +NM ++AV +   L
Sbjct: 146 ISVCICYSTKESSVVNMVLTAVHVAFIL 173


>12_01_0368 +
           2815424-2815658,2816898-2817120,2818329-2818680,
           2819354-2819620
          Length = 358

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/25 (40%), Positives = 20/25 (80%)
 Frame = +3

Query: 477 ISLCFSLSTKKSTALNMTISAVVII 551
           I++C   STK+S+++NM ++AV ++
Sbjct: 146 ITVCICYSTKESSSVNMVLTAVHVL 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,236,316
Number of Sequences: 37544
Number of extensions: 182662
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)