Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_P20
         (464 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   251   3e-69
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.2  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   3.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   3.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   3.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   3.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   3.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   3.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   3.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   3.7  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  251 bits (614), Expect = 3e-69
 Identities = 118/128 (92%), Positives = 122/128 (95%)
 Frame = -2

Query: 385 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 206
           MAIRPVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 205 SNKKTRHMLPNGFRKVLVHNVKELEXLMMQNRKYCAEIAHGXSSKKRKLIVERAQQLSIR 26
           SNKKTRHMLP GFRKVLVHNVKELE LMMQNRK+CAEIAHG SSKKRK IVERAQQLSIR
Sbjct: 61  SNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIR 120

Query: 25  VTNAAARL 2
           VT A+ARL
Sbjct: 121 VTYASARL 128


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = -2

Query: 229 LMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEXLMMQNRKYCAEIAHGXSSKKRKLIVE 50
           L   +  G   + +  +P+G+   +   + EL  L +  + +   + HG     R LIV+
Sbjct: 66  LAAKVWNGQYARVQQSMPDGWETEISDQMLELRDLPISGKPFQIRMKHGLI---RDLIVD 122

Query: 49  R 47
           R
Sbjct: 123 R 123


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 134 GXLDDAKQEVLRRDRSWXLFEEAEAD 57
           G     ++E LRR R W + +E E +
Sbjct: 26  GLRSRTQEERLRRRREWMIQQERERE 51


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 134 GXLDDAKQEVLRRDRSWXLFEEAEAD 57
           G     ++E LRR R W + +E E +
Sbjct: 26  GLRSRTQEERLRRRREWMIQQERERE 51


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 134 GXLDDAKQEVLRRDRSWXLFEEAEAD 57
           G     ++E LRR R W + +E E +
Sbjct: 26  GLRSRTQEERLRRRREWMIQQERERE 51


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 134 GXLDDAKQEVLRRDRSWXLFEEAEAD 57
           G     ++E LRR R W + +E E +
Sbjct: 26  GLRSRTQEERLRRRREWMIQQERERE 51


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 134 GXLDDAKQEVLRRDRSWXLFEEAEAD 57
           G     ++E LRR R W + +E E +
Sbjct: 26  GLRSRTQEERLRRRREWMIQQERERE 51


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 134 GXLDDAKQEVLRRDRSWXLFEEAEAD 57
           G     ++E LRR R W + +E E +
Sbjct: 26  GLRSRTQEERLRRRREWMIQQERERE 51


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 134 GXLDDAKQEVLRRDRSWXLFEEAEAD 57
           G     ++E LRR R W + +E E +
Sbjct: 26  GLRSRTQEERLRRRREWMIQQERERE 51


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 134 GXLDDAKQEVLRRDRSWXLFEEAEAD 57
           G     ++E LRR R W + +E E +
Sbjct: 26  GLRSRTQEERLRRRREWMIQQERERE 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,533
Number of Sequences: 438
Number of extensions: 2266
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)