Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_P17
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   1.4  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    28   1.4  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   9.7  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    25   9.7  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   9.7  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   9.7  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -1

Query: 228 LKFILSSMELFYRNLWLRCLLVTNFKN*IKFIKQLLSDSYWPRG 97
           L F L+ +E+FY      CLL   F   +  I  LLSD Y   G
Sbjct: 810 LTFELAFLEIFYE--LFNCLLHLQFSKYLVIIGTLLSDKYMTLG 851


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +3

Query: 441 DYLHPDLKLIHLLIDITRMNSFAMTSLTHTIPLNNLKTYIIFYYLDNLXXXXXXXXXXQL 620
           DY+H    +   +ID+  +NS A+ S T  +P    +++ +   +             QL
Sbjct: 181 DYMHRGRSISSPMIDVEHINSTAVPSKTKNLPEKPKRSHKLRNSITFAKIEDHPERKSQL 240

Query: 621 RKYTKSLR 644
           R+ + SL+
Sbjct: 241 RRLSSSLK 248


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
 Frame = -1

Query: 342 SFVNSFGMFKKYILTLTSVSLLHFFYNS*FIYWCTNLILKFILSSMELFYR--------- 190
           S   +FG+ K Y+  LT+  +   F    F+ W   L+   +  +M  F+          
Sbjct: 26  SLEKNFGVSKLYVF-LTAAGIYALFL---FLNWGGFLLTNLLAFAMPAFFSINAIETTNK 81

Query: 189 ---NLWLRCLLVTNFKN*IKFIKQLL 121
                WL   LVT+F N I++  QL+
Sbjct: 82  ADDTQWLTYYLVTSFLNVIEYWSQLI 107


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 313 KIYTNFNICKFITFFLQFII 254
           + +T+ N C +IT FL F+I
Sbjct: 189 RYWTDINSCAWITIFLVFVI 208


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 435 LCDYLHPDLKLIHLLIDITRMNSFAMTSLTHTIPLNNLKTYIIFYYLDNL 584
           +CDYL        L   I+ +NS  +  L  T    N KT   F  L+NL
Sbjct: 740 VCDYLRELNNFASLFSIISALNSSPIHRLRKTWANLNSKTLASFELLNNL 789


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -3

Query: 133  QTTVVRQLLAXRTEAX---GHERLLR*IERDKT*QAMSVAHF 17
            QTT V +L+  +       GH  LLR +E +K+     +AHF
Sbjct: 1027 QTTNVAELVNQKISEMNIPGHIHLLRELEEEKSNTQRKIAHF 1068


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,845
Number of Sequences: 5004
Number of extensions: 49563
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)