Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_P17
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.21 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.85 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.5  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 113 LSDNSCLINLI*FLKFVTSRHLSHKFR*NNSIEDNM-NFKMRL 238
           LS   C+   + ++ F TS  +S KFR    IEDN+   +M+L
Sbjct: 590 LSSMLCIPGYMIYIWFTTSGTISEKFRKLIRIEDNVATLRMKL 632


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 113 LSDNSCLINLI*FLKFVTSRHLSHKFR*NNSIEDNM-NFKMRL 238
           LS   C+   + ++ F TS  +S KFR    IED++   +M+L
Sbjct: 537 LSSMLCIPGYMIYIWFTTSGTISEKFRKLIRIEDDVATLRMKL 579


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 417 IITRELLCDYLHPDLKL 467
           ++ R  LC+YL+  L+L
Sbjct: 321 VVARRCLCEYLYKQLEL 337


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 458 SKINTFANRYNTYE*FCND*FNAYNSVEQS*NLYYI 565
           S  N + N YN Y  + N+  N Y  +    N+ YI
Sbjct: 325 SNYNNYNNNYNNYNNYNNNYNNNYKKLYY--NINYI 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,741
Number of Sequences: 438
Number of extensions: 3841
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)