Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_P15
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 30 0.18
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 28 0.93
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 1.2
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 1.2
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 27 1.2
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 2.2
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1... 25 6.6
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 25 6.6
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.6
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 8.7
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 30.3 bits (65), Expect = 0.18
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +2
Query: 266 SPDHDL*FFQLHHWVLSHIPPNICHYQHFQKTYLFDYKQNKASLLIDK--KLKQFSCLKK 439
S D L F LH + L ++ Y H + + Q+ L++D+ L +FS L K
Sbjct: 265 SGDSSLKSFSLHFFALQFFSTSLIQYTHICRKCVITILQSYQQLIVDQPANLLKFSLLSK 324
Query: 440 SACYLL 457
+ L
Sbjct: 325 KVSHFL 330
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 27.9 bits (59), Expect = 0.93
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 509 NELNNVILSLSGHKSQYLVNNMLISLNRKTVLTFYLSIVRPCFVYSQTN 363
NE+ L LS K L+N+ +N+K L +L +V P F S ++
Sbjct: 580 NEILKQQLELSESKLASLLNSYQSFINKKEHLYSFLQLVEPSFAKSDSS 628
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 27.5 bits (58), Expect = 1.2
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = -3
Query: 302 DEVGRTIGHGLVKNKLAACVNSIPGITSIYEWKNEINEDKETLLMIK 162
DE+ R + G+V NK +A +S+ ++YE+ + ++KET+ +K
Sbjct: 1810 DELCRRLSLGIVANKQSASQSSLIFCYNVYEF---VVKEKETVAALK 1853
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.5 bits (58), Expect = 1.2
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = -3
Query: 206 KNEINEDKETLL-MIKTRTSQVDKLTEYVRSNHPYEVCEVISVPIKNGNPPDLKXIGEIV 30
K E NE ++L I T+ +++DKLT+Y+ S++ E+ E + + + N ++ G +
Sbjct: 973 KAEFNEQCKSLQETIVTKDAELDKLTKYI-SDYKTEIQE-MRLTNQKMNEKSIQQEGSLS 1030
Query: 29 PRMRRV 12
++RV
Sbjct: 1031 ESLKRV 1036
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 308 VLSHIPPNICHYQHFQKTYLFDYKQNKASLLIDKKLKQ 421
+LSH PPNI Y FQK YL + K +L+ Q
Sbjct: 840 LLSHYPPNII-YATFQK-YLSSFINRKFGVLLSSSFIQ 875
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -3
Query: 194 NEDKETLLMIKTRTSQVDKLTEYVRSNHPYEVCEVISVPIKNG 66
N + + LL + + ++ EY+ Y+V E+ + I+NG
Sbjct: 1017 NANLQNLLFLTAIKADKSRVMEYIDKLDKYDVDEIAEIAIENG 1059
>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 6.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 83 VPIKNGNPPDLKXIGEIVPRMRRVINN 3
+P+ P+L + +IVP +R +I+N
Sbjct: 115 LPVAKSRLPELYELSKIVPHLRLMIDN 141
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 25.0 bits (52), Expect = 6.6
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +1
Query: 61 GLPFFMGTDITSHTSYG*LERTYSVSLSTCDV 156
G PF+M ++ TSYG +S+ ++ ++
Sbjct: 167 GTPFWMAPEVIQQTSYGLAADIWSLGITAIEM 198
>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 6.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 238 PFPE*HLFMSGKMKLMKIKRPYL**KLVHRK 146
P P H++MS +K+ K +P+L + RK
Sbjct: 90 PSPPVHIYMSALIKVCKKSKPHLQTHCIKRK 120
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 24.6 bits (51), Expect = 8.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 197 FHFSTHK*MLFREWSLHRQQAYSSPDHDL*FFQLHHWVLSHIPPN 331
F F+T K + W + ++ + HD + L H+VL ++P N
Sbjct: 1291 FGFNT-KLSEYVNWRIALERFVINESHDSALYPLLHFVLDNLPAN 1334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,087
Number of Sequences: 5004
Number of extensions: 40678
Number of successful extensions: 98
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -