Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_P12
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    28   0.86 
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   1.5  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    26   4.6  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 276 IKCMNDRLAVPERNPLNVLY 217
           + C ND+L+V ERN L+V Y
Sbjct: 31  VACSNDKLSVEERNLLSVAY 50


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 309 ECISLNQCVNYIKCMNDRLAVPERNPLNVLY 217
           EC+ L+Q  N    +  RL + E N  NVLY
Sbjct: 23  ECVELSQVENLFTELASRLELLEMNSKNVLY 53


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +1

Query: 241 FGNGEPIVHTFNVVHTLVQGNAFHCCS-TPRHHT-FTLVYC*YRLAPT 378
           FGNG+ IVH F+    +    AF     +P   T F L +  Y   PT
Sbjct: 352 FGNGKSIVHEFSKDDNIETLRAFVASHLSPEESTSFQLTFSNYEALPT 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,998
Number of Sequences: 5004
Number of extensions: 29907
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)