Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_P12
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67879-6|CAA91791.2| 1482|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AL023817-1|CAA19436.2| 1482|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z67879-6|CAA91791.2| 1482|Caenorhabditis elegans Hypothetical protein
            VF11C1L.1 protein.
          Length = 1482

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 420  YCFF*WRAYPRCESSGCESVLTVHERECVMTRCRAAVECISLNQCVNYIKCMNDRLAVPE 241
            +CF   R+Y  C SS CE  +  H R+ V  +    +   ++N+  N I+    +  +  
Sbjct: 835  FCFN--RSY-ECPSSNCEVPMLDHSRKLVYGKVCVEISTQTVNEAENAIESEQQKSIMTW 891

Query: 240  RN 235
            RN
Sbjct: 892  RN 893


>AL023817-1|CAA19436.2| 1482|Caenorhabditis elegans Hypothetical
            protein VF11C1L.1 protein.
          Length = 1482

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 420  YCFF*WRAYPRCESSGCESVLTVHERECVMTRCRAAVECISLNQCVNYIKCMNDRLAVPE 241
            +CF   R+Y  C SS CE  +  H R+ V  +    +   ++N+  N I+    +  +  
Sbjct: 835  FCFN--RSY-ECPSSNCEVPMLDHSRKLVYGKVCVEISTQTVNEAENAIESEQQKSIMTW 891

Query: 240  RN 235
            RN
Sbjct: 892  RN 893


>Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical
           protein R08D7.6c protein.
          Length = 856

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 243 ERNPLNVLYSV*GSVF*THNIIVLDVSLLIDETCKKIPRL 124
           ++ PL+VLYS  GSV   H+     + LL  E C  +  L
Sbjct: 476 QKTPLSVLYSTEGSVLERHH-FAQTIKLLQQEECSILENL 514


>Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical
           protein R08D7.6b protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 243 ERNPLNVLYSV*GSVF*THNIIVLDVSLLIDETCKKIPRL 124
           ++ PL+VLYS  GSV   H+     + LL  E C  +  L
Sbjct: 479 QKTPLSVLYSTEGSVLERHH-FAQTIKLLQQEECSILENL 517


>Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical
           protein R08D7.6a protein.
          Length = 859

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 243 ERNPLNVLYSV*GSVF*THNIIVLDVSLLIDETCKKIPRL 124
           ++ PL+VLYS  GSV   H+     + LL  E C  +  L
Sbjct: 479 QKTPLSVLYSTEGSVLERHH-FAQTIKLLQQEECSILENL 517


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 387 CESSGCESVLTVHERECVMTRCRAAVECISLNQCVNYIKC 268
           C +SGC S+         + RC   + C   NQC N + C
Sbjct: 599 CVNSGCCSLPRCPSGLMSVQRCAMGIGCPPGNQCENGVCC 638


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,156,912
Number of Sequences: 27780
Number of extensions: 175894
Number of successful extensions: 411
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)