Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_P11
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    27   2.0  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   2.0  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   4.7  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   8.3  

>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 187 FISKLLQNL*YIYHLNTHKAKTDNMLKHWNDSLYK 291
           F  KLL  L Y  H    + KT  ++  W  SL+K
Sbjct: 180 FYKKLLGGLGYELHFIKGEGKTHGIMIFWKSSLFK 214


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 142 SHSQSSTFKLKIXNIFISKLLQNL*YIYHLNTHKAKTDNMLKHWNDSLYKHQI 300
           S S     K K  N+  S+L   L  I HL + K + D ++ H N  + +  I
Sbjct: 750 SGSNDDIEKNKEINVLNSELADKLAQIRHLESDKMELDKLVHHLNRGIEEANI 802


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +1

Query: 244 AKTDNMLKHW---NDSLYKHQILPIT 312
           A      KH+   NDSLYK+++LP T
Sbjct: 572 ANCQKCTKHYVLENDSLYKNRVLPFT 597


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 155 PAPSN*KLXIYLFQNYYKIYNIF 223
           PAP    L ++LF+NY+ + NIF
Sbjct: 717 PAPQAFALLVFLFKNYH-LQNIF 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,862
Number of Sequences: 5004
Number of extensions: 29663
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)