Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_P11
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68121-1|CAA92204.2|  174|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U64839-1|AAB04844.2|  399|Caenorhabditis elegans Acyltransferase...    27   7.5  
U00044-5|AAK93857.1|  174|Caenorhabditis elegans Mesoderm and en...    27   7.5  
AF302238-1|AAG21386.1|  174|Caenorhabditis elegans GATA-type tra...    27   7.5  
AF302237-1|AAG21385.1|  174|Caenorhabditis elegans GATA-type tra...    27   7.5  

>Z68121-1|CAA92204.2|  174|Caenorhabditis elegans Hypothetical
           protein T24D3.1 protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +3

Query: 33  ANQNQQKSMQCSNCNA--LLQWRFI 101
           +N + +KS QCSNC+    ++WR I
Sbjct: 104 SNSDNKKSFQCSNCSVTETIRWRNI 128


>U64839-1|AAB04844.2|  399|Caenorhabditis elegans
           Acyltransferase-like protein 9 protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 232 NTHKAKTDNMLKHWNDSLYKHQIL 303
           +T K K DN+L ++ ++ YK+Q+L
Sbjct: 156 DTDKTKLDNILNYYAETEYKYQLL 179


>U00044-5|AAK93857.1|  174|Caenorhabditis elegans Mesoderm and
           endoderm determinationprotein 2 protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +3

Query: 33  ANQNQQKSMQCSNCNA--LLQWRFI 101
           +N + +KS QCSNC+    ++WR I
Sbjct: 104 SNSDNKKSFQCSNCSVTETIRWRNI 128


>AF302238-1|AAG21386.1|  174|Caenorhabditis elegans GATA-type
           transcription factor protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +3

Query: 33  ANQNQQKSMQCSNCNA--LLQWRFI 101
           +N + +KS QCSNC+    ++WR I
Sbjct: 104 SNSDNKKSFQCSNCSVTETIRWRNI 128


>AF302237-1|AAG21385.1|  174|Caenorhabditis elegans GATA-type
           transcription factor protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +3

Query: 33  ANQNQQKSMQCSNCNA--LLQWRFI 101
           +N + +KS QCSNC+    ++WR I
Sbjct: 104 SNSDNKKSFQCSNCSVTETIRWRNI 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,052,868
Number of Sequences: 27780
Number of extensions: 160705
Number of successful extensions: 363
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)