Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_P11
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   6.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 538 IVPMICYICIYKYILFTYNVHTNNDFFIY 452
           +V ++CY CI+K + +T  V      F Y
Sbjct: 215 VVWIMCYFCIWKGVKWTGKVVYFTSLFPY 243


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 538 IVPMICYICIYKYILFTYNVHTNNDFFIY 452
           +V ++CY CI+K + +T  V      F Y
Sbjct: 268 VVWIMCYFCIWKGVKWTGKVVYFTSLFPY 296


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 532 PMICYICIYKYILFTYNVHTNNDFFIYHF 446
           P + Y+    YILFT+     N   I+ F
Sbjct: 45  PSLHYLLALLYILFTFLALLGNGLVIWIF 73


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 538 IVPMICYICIYKYILFTYNV 479
           +V ++CY CI+K +  T  V
Sbjct: 182 LVWILCYFCIWKGVKTTGKV 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,294
Number of Sequences: 438
Number of extensions: 2157
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)