Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_P08
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    28   1.2  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   2.0  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    26   4.7  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.2  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    25   8.2  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   8.2  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   8.2  

>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 684 FHHNNFLVAQKSHLN*AIQSYKKSLACWPF 595
           +   NFL+ + SH   A+Q+ +K+L C+ F
Sbjct: 687 YEQRNFLIKKISHAWKALQTERKNLTCYEF 716


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -1

Query: 453 CNNHHSFDNTNFNKKHF--HTYCLQLVAISMYIMALWSRL 340
           C  H+  +N +  K      TYC  ++ +  Y + LW  L
Sbjct: 577 CTKHYVLENDSLYKNRVLPFTYCCSIMLVLAYAIGLWFTL 616


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -3

Query: 400 HLLSTACGYKYVYHGIMV*TRMW*QAILDCILLNY---LLFISLRWNYFITKFSYFNFYL 230
           HLL T   Y YV H   V   +W       +L N+   LLF  + W +F  + +    YL
Sbjct: 155 HLLVTDGIYAYVRHPSYVGFFIWALGT-QMLLGNFVSTLLFSLVLWKFFSQRITTEEAYL 213

Query: 229 INF 221
           ++F
Sbjct: 214 VSF 216


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 200 HKQECYFQLNYLFPWLRVTLKLHVCGISES*SXAL 96
           H  E Y  L Y  PW    L+LH+ G+ E  + +L
Sbjct: 433 HNSEFYAWLTY--PWQTQILRLHLDGVVEDVTESL 465


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 279 SDGITLLQNSLTLIFILSTFYVLTVLP*AGMLLST*LFVPMVESDFEIAC 130
           +DG+  LQN LT    LST  ++ +     +L    +  P  ++   I+C
Sbjct: 314 ADGLLSLQNDLTTPSSLSTSLLMEITKAIALLTQLKVPAPTFKTSVSISC 363


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 308 YTVKYGLLPHSSLDHNAMIYILIATSCRQ 394
           YT  Y  + +  L  + +IY L  TSC Q
Sbjct: 729 YTELYRFISNGHLHESGIIYCLSRTSCEQ 757


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 617 NLLPVGHFSCKKHICTSFAVDQSGFICICD 528
           NLLPV      ++    + + QSG++C+ D
Sbjct: 71  NLLPVAVLLSPENAFELYVIFQSGYVCVHD 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,417
Number of Sequences: 5004
Number of extensions: 49184
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)