Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_P08
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467     28   6.5  
02_05_0885 - 32488750-32489145,32489372-32490040,32490245-324903...    28   6.5  
01_01_0285 - 2360799-2362631                                           28   6.5  

>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
          Length = 976

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 298 YLLFISLRWNYFITKFSYFNFYLINFLCTYCIAISRNVTFNLIICSH 158
           Y++ I   W+  + ++    FY  N LC+  I  +R VT +   CSH
Sbjct: 280 YIIIIDDIWDEKLWEYIKCAFYR-NKLCSRIITTTRKVTVSKACCSH 325


>02_05_0885 -
           32488750-32489145,32489372-32490040,32490245-32490301,
           32490814-32491152
          Length = 486

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 501 YKQQYGTVIITDANKSTLINCK*CTYMFFT 590
           Y+  YG + +TD  K++ +  + C Y F+T
Sbjct: 417 YRMLYGPISVTDRTKASDLPYRVCRYTFYT 446


>01_01_0285 - 2360799-2362631
          Length = 610

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -3

Query: 661 STEITPKLSHTVLQKISCLLAILVVKNIYVHHLQLIRVDLFASVIITVPY 512
           S  +TP++SH VL+++      +    ++++   +I +DL   V++  PY
Sbjct: 292 SIRLTPEVSHAVLRELKNCNGNITDGRMWLYQKGIIDMDLDRDVLLGNPY 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,304,056
Number of Sequences: 37544
Number of extensions: 256112
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)