Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_P08
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine rece...    34   0.12 
AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical ...    30   1.4  
AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine re...    29   2.5  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z72505-3|CAA96610.1|  340|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF125459-10|AAD12841.2|  177|Caenorhabditis elegans Serpentine r...    28   5.8  

>U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine
           receptor, class v protein29 protein.
          Length = 316

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -1

Query: 396 YCLQLVAISMYIMALWS--RLECGNKPYLTVYY*IICYSLVSDGITLL 259
           YC+ +  I +Y+M L    +L C +K Y+T +Y I+    ++D I ++
Sbjct: 13  YCVSIFTIPLYLMVLVCLLKLRCYSKTYVTTFYTILLQHCIADIIIMV 60


>AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical
           protein T21G5.2 protein.
          Length = 109

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 313 CILLNYLLFISLRWNYFITKFSYFNFYLINF--LCTYC 206
           C+L NY LFI L  +  I  FS F  +  N   L  YC
Sbjct: 49  CVLFNYFLFIDLSISTVIVSFSRFIKFQTNLRQLSNYC 86


>AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine
           receptor, class h protein250 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = -3

Query: 409 TFPHLLSTACGYKYVYHGIMV*TRMW*QAILDCILLNYLLFISLRWNYFITKFSYFNFYL 230
           TF  LL     YKY Y  + V         L  + +   +FI      +I  F Y N  L
Sbjct: 213 TFRQLLKRQKNYKYSYRTVRVQKNFLVSMSLQFVFIMTFMFIPCVLLLYIVIFKYHNQIL 272

Query: 229 INFL 218
            NF+
Sbjct: 273 NNFI 276


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = -3

Query: 370 YVYHGIMV*TRMW*QAILDCILLNYLLFISLRWNYFITKFSYFNFYLINFLCTYCIAISR 191
           Y YH      R W   IL+C  LN++L +    N     F+  +FY++N L  Y +AI+ 
Sbjct: 133 YKYHKYRAFFRGWFVPILNC--LNFVLALIFLIN---LNFNVISFYMVNSLIFY-LAITF 186

Query: 190 NVTF 179
           ++ F
Sbjct: 187 SLLF 190


>Z72505-3|CAA96610.1|  340|Caenorhabditis elegans Hypothetical
           protein C50C10.4 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -3

Query: 307 LLNYLLFISLRWNYFITKFSYFNFYLINFLCTYCIAISRNVTFNLII 167
           ++ Y LF +L   +F+  +++ N     F+ ++C+ +  N  F+LII
Sbjct: 73  IMFYFLFNTL---FFVGDYAHLNLPSAGFITSWCVDVKPNRLFSLII 116


>AF125459-10|AAD12841.2|  177|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 23 protein.
          Length = 177

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -3

Query: 337 MW*QAILDCILLNYLLFISLRWNYFITKFSYFNFYLINFLCTYCIAIS-RNVT-FNLIIC 164
           +W + +   ++L YLL + + WN  I++  Y N   + F   Y  AI   NV+  NL  C
Sbjct: 13  LWKKILKPVLILQYLLPLGVIWNILISRV-YINPSGVGFSVNYKAAIPWANVSLLNLFHC 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,351,568
Number of Sequences: 27780
Number of extensions: 270593
Number of successful extensions: 616
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)