Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_P04
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1010 - 21704225-21704368,21706407-21706550,21706661-21706834 70 1e-12
01_06_1566 + 38283781-38283909,38283985-38284128 61 8e-10
07_03_0279 + 16211180-16211410,16211516-16211659,16212466-162125... 51 7e-07
01_01_0910 + 7175107-7175319,7175448-7175588,7175696-7175866 46 3e-05
02_04_0030 + 19041107-19041334,19041413-19041733 40 0.002
12_02_0289 - 16914975-16916238,16916246-16916484 29 4.1
07_03_0391 - 17587144-17587323,17587460-17587566,17587664-175877... 29 4.1
06_03_1355 - 29522847-29523494 28 7.1
>04_03_1010 - 21704225-21704368,21706407-21706550,21706661-21706834
Length = 153
Score = 70.1 bits (164), Expect = 1e-12
Identities = 35/117 (29%), Positives = 62/117 (52%)
Frame = -2
Query: 417 LRKLKVTSCGNGSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVS 238
L +++ + +G ++ F V P + G L G A L D + + + + + T GVS
Sbjct: 34 LTGVRIDAAEHGRLLCSFVVTPRIASPAGYLLSGVTATLADQLGS-GVFLSSGIGTSGVS 92
Query: 237 IDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKXIGI 67
++L+LS+ A G+ IEVE K + GK + + V+ R K +++A RHTK + +
Sbjct: 93 LELNLSYVDVASIGEEIEVEGKLLRAGKSVGVVSVDFRKKKTGKLIAQARHTKYLAV 149
>01_06_1566 + 38283781-38283909,38283985-38284128
Length = 90
Score = 60.9 bits (141), Expect = 8e-10
Identities = 30/87 (34%), Positives = 51/87 (58%)
Frame = -2
Query: 327 LHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKI 148
+HGG +A LVD + + + T GV++++++S+ AA+ + IE+EA+ G+
Sbjct: 1 MHGGAVASLVDLVGSAVFFAGGSPKT-GVTVEITVSYLDAARANEEIEMEARVLGIGETT 59
Query: 147 AFLEVEVRNKDKNQVLASGRHTKXIGI 67
+ VEVR K +VLA GR TK + +
Sbjct: 60 GCVTVEVRRKGAGEVLAHGRITKYLAV 86
>07_03_0279 +
16211180-16211410,16211516-16211659,16212466-16212597,
16213478-16213591
Length = 206
Score = 51.2 bits (117), Expect = 7e-07
Identities = 33/112 (29%), Positives = 52/112 (46%)
Frame = -2
Query: 417 LRKLKVTSCGNGSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVS 238
L V+S + + V P +N TLHGG +A + +A+ A D
Sbjct: 53 LSSAAVSSSASPRVSCTLTVSPAAVNGYNTLHGGMVAAVAEAVGM-ACARAAAGDKEMFL 111
Query: 237 IDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHT 82
+LS ++ SAA+ +EVEA+ + G+ + VE R KD ++ S R T
Sbjct: 112 GELSTAYLSAARLNSEVEVEAQILRKGRSVVVTTVEFRLKDTKKLCYSSRAT 163
>01_01_0910 + 7175107-7175319,7175448-7175588,7175696-7175866
Length = 174
Score = 45.6 bits (103), Expect = 3e-05
Identities = 29/106 (27%), Positives = 50/106 (47%)
Frame = -2
Query: 405 KVTSCGNGSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLS 226
+V+ G +V F V + G H G +A VD + + T + V +I +
Sbjct: 51 RVSLAEPGRLVCSFCVPAAVADADGRWHAGAMAAAVDNLCAAVVYTADGVHR--FTISQA 108
Query: 225 LSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGR 88
+SF+S A G+ +E++ + K+ VEVR K +++A GR
Sbjct: 109 MSFFSPAAHGEEVEMDGRVAHRKGKLTAAVVEVRRKASGELVAIGR 154
>02_04_0030 + 19041107-19041334,19041413-19041733
Length = 182
Score = 39.5 bits (88), Expect = 0.002
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Frame = -2
Query: 408 LKVTSCGNGSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDL 229
++V S G + F V ++ G L G + LVD + + A + VS D+
Sbjct: 55 IRVDSVRPGLVDCSFTVPSRLTDRSGCLAAGAVVSLVDEVGSAASIADGRPVK--VSTDM 112
Query: 228 SLSFYSAA--KEGDNIEVEAKTRKTGKKIAF--LEVEVRNKDKNQVLASGRHT 82
S+SF S A + GD + + A R G K A+ V + N +V+A GRH+
Sbjct: 113 SVSFVSLAQARPGDRLRITA--RALGHKGAYSATHVLISNAATGEVVAEGRHS 163
>12_02_0289 - 16914975-16916238,16916246-16916484
Length = 500
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = -2
Query: 261 NVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIA-------FLEVEVRNKDKNQV 103
N D R + +D + ++ D IEVE T + GKK A + + +N DK++V
Sbjct: 276 NADLRKLFLDTTDKSIIVIEDIDAIEVELTTNRKGKKAANGDDKHVVIGLSDKNHDKSKV 335
Query: 102 LASG 91
SG
Sbjct: 336 TLSG 339
>07_03_0391 -
17587144-17587323,17587460-17587566,17587664-17587742,
17587850-17587939,17588337-17588588,17588748-17588894,
17589071-17589246,17589303-17589394,17589582-17589673
Length = 404
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 133 NFEECNFFSGFTSFGLYFNIVSFFGC 210
NF+E FF G SF +YF SF+ C
Sbjct: 144 NFQE--FFQGMVSFPIYFPGTSFYRC 167
>06_03_1355 - 29522847-29523494
Length = 215
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 321 GGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSA 208
GG I +L ++ A TN D +DL+L F+ A
Sbjct: 77 GGTIDYLEALVTVMARNTNSRADASFARVDLALRFHGA 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,263,560
Number of Sequences: 37544
Number of extensions: 256062
Number of successful extensions: 598
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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