Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_P03
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    28   1.1  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   4.5  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    25   6.0  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    25   7.9  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   7.9  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   7.9  

>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 488 ALAVGVNALTEEQKAEITKSSLPLIAECSKEFSVNQGDIDAAKKLGD 348
           A   G N +T   KA I + +  L  EC+KE +    DI+  +++ D
Sbjct: 200 ARQTGKNNITVVHKATIMRMADGLFLECAKELAPEYPDIELREEILD 246


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 310 MKHPTKQEFKPLGSPSFLAASMSP*FTLNSLEHSAIRGNDD 432
           +KHPTK + KP+      A ++ P  ++  ++H  +R  DD
Sbjct: 176 LKHPTKPDLKPVS-----AWNLLPNTSMAGIQHLMLRVADD 211


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 11/125 (8%)
 Frame = -2

Query: 461 TEEQKAEITKSSLPLIAECSKEFSVNQGDIDAAKKLGD--PSGLN-----SCFVGCFMKK 303
           TEE K   TKS+LP      K+    +G +D  K+ G   P+G       +C       K
Sbjct: 169 TEENKKP-TKSALPKKEASKKKNPKVKGPVDVEKQCGVLLPNGQMCARSLTCKTHSMSSK 227

Query: 302 AGIINASGLFDV--AATIEKSKKYLTSE--EDLKAFEKLTEMCAPENDKPVSDSXQGLRK 135
             +   S  +DV  AA  +K++  +  +  E  K  E        ++D+ VS     L+K
Sbjct: 228 RAVPGRSQPYDVLLAACQKKNQVKIQRQILETAKESEDNQHQAPVDSDEEVSFIMNVLQK 287

Query: 134 SKTSP 120
           S   P
Sbjct: 288 SGNQP 292


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 337 KPLGSPSFLAASMSP*FTLNSLEHSAIRGNDD 432
           KP    SF A+ M+P  +L S  +SAI G +D
Sbjct: 477 KPSVLASFNASIMNPKSSLPSFSNSAILGTND 508


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 297 NHQRKWSFRCSRYY*EEQEISYQRGGL 217
           +H R   +R SR Y   QEISY  G L
Sbjct: 240 SHPRGIHWRDSRSYLLSQEISYSNGNL 266


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 270  IEKTTCVDDSSFLHETSYKARVQTARIT-KFLSRVN 374
            I   TCV D+    E  Y +R   +R+T  F+S+ N
Sbjct: 976  IPDVTCVIDTGVHREMRYNSRRHLSRLTDTFVSKAN 1011


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,078
Number of Sequences: 5004
Number of extensions: 38000
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)