Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_P03
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152...    33   0.16 
11_06_0653 + 25911162-25911272,25911648-25911694,25912877-259133...    29   2.0  
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282...    29   3.5  
04_04_0956 + 29644425-29645579                                         29   3.5  
03_03_0027 - 13876398-13876973,13877082-13877159,13877425-138775...    29   3.5  
01_05_0530 + 22984672-22984821,22985444-22985676,22986659-229867...    28   4.6  
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704...    27   8.0  

>11_06_0645 -
           25814302-25814759,25814853-25815005,25815032-25815214,
           25815342-25815531,25815624-25815784,25816136-25816623,
           25817035-25817075
          Length = 557

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 222 LLAGKIFLALLNSSGYIEKTTCVDDSSFLHETSYKARVQTA 344
           LL+GK++  L N  GY+      D+SSF+    +K  V  A
Sbjct: 112 LLSGKLYFRLQNGVGYLNSAKFQDNSSFVPSRKFKLGVMAA 152


>11_06_0653 +
           25911162-25911272,25911648-25911694,25912877-25913355,
           25914089-25914249,25914324-25914519,25914745-25914807,
           25914898-25915047,25915148-25915494
          Length = 517

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 210 GFQVLLAGKIFLALLNSSGYIEKTTCVDDSSFLHETSYKARVQTA 344
           G + LL+GK++  L    GY+      D+SSF+     K  V  A
Sbjct: 144 GKEHLLSGKLYFRLQGGVGYLNSAKFQDNSSFVPSKRLKLGVMAA 188


>11_06_0656 +
           25926192-25926289,25927530-25927659,25928248-25928294,
           25929274-25929388,25929504-25929753,25930079-25930239,
           25930372-25930567,25930672-25930836,25930918-25931070,
           25931160-25931248,25931385-25931423,25931460-25931681,
           25933503-25934165
          Length = 775

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 222 LLAGKIFLALLNSSGYIEKTTCVDDSSFLHETSYKARVQTA 344
           LL+GK++  L N  GY+      D+SSF+    +K  V  A
Sbjct: 150 LLSGKLYFRLQNGVGYL-NAKFQDNSSFVPSKKFKLGVMAA 189


>04_04_0956 + 29644425-29645579
          Length = 384

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 518 ANSFVVLAFCALAVGVNALTEEQKAEITKSSLP 420
           ANS VVL F A  +G+ A ++E  + + +   P
Sbjct: 165 ANSVVVLTFSAALLGIGASSDETASSVPRGKYP 197


>03_03_0027 -
           13876398-13876973,13877082-13877159,13877425-13877554,
           13877820-13878007
          Length = 323

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/84 (23%), Positives = 36/84 (42%)
 Frame = -2

Query: 476 GVNALTEEQKAEITKSSLPLIAECSKEFSVNQGDIDAAKKLGDPSGLNSCFVGCFMKKAG 297
           G  A T+E     T   +P +     E +    D  A+ ++G   G  +  V C+M + G
Sbjct: 184 GAAATTKEAFEWATSVPVPALVRAGGELARFLNDT-ASYRIGKSGGDMASTVECYMAERG 242

Query: 296 IINASGLFDVAATIEKSKKYLTSE 225
           +     +  VAA  E++ + +  E
Sbjct: 243 VGGGEAVAAVAALAERAWRTINGE 266


>01_05_0530 +
           22984672-22984821,22985444-22985676,22986659-22986743,
           22986953-22987036,22987114-22987455
          Length = 297

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -2

Query: 470 NALTEEQKAEITKSSLPLIAECSKEFSVNQGD---IDAAKKLGDPSGLNSCFVGCFMKK 303
           NA+ + Q   +    + L +   KE SV + D   ++A KKL +PSG N   +  ++++
Sbjct: 99  NAIIDAQPLAVVVEPMQLESTPEKEKSVARLDDLILEAIKKLKEPSGSNRTTISSYIEE 157


>12_02_0118 -
           13869237-13869307,13869375-13869465,13870321-13870440,
           13870668-13870795,13871159-13871270,13871719-13871817,
           13871918-13871992,13872099-13872320,13873177-13874034
          Length = 591

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 259 VAATSKRPLALMIPAFFMKHPTKQ 330
           +  TS  PLALM+  F + HP+++
Sbjct: 392 ILTTSAMPLALMVQPFALPHPSEE 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,824,812
Number of Sequences: 37544
Number of extensions: 227115
Number of successful extensions: 501
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)