Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_P03
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016669-5|AAY55870.1|  124|Caenorhabditis elegans Hypothetical ...    33   0.19 
Z75526-7|CAE17729.1|  325|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    27   7.2  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    27   7.2  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      27   7.2  
U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory ...    27   9.5  
L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degeneri...    27   9.5  

>AF016669-5|AAY55870.1|  124|Caenorhabditis elegans Hypothetical
           protein K10G6.5 protein.
          Length = 124

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = +3

Query: 159 TDWFVVFWSAHLR*FLEGFQVLLAGKIFLALLNSSGYIEKTTCVDDSSFLHETSYKA 329
           T W+ V W+  L  F+  FQ++ A + FLALL  SG I+    +  S  L  T +KA
Sbjct: 58  TSWYPVVWTCWLHMFILYFQIMGACE-FLALL--SGLIDCLMVLPLSIILSRTDFKA 111


>Z75526-7|CAE17729.1|  325|Caenorhabditis elegans Hypothetical
           protein C06H2.7 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 446 AEITKSSLPLIAECSKEFSVNQGDI 372
           A +T +SLPLI EC  E+  ++ +I
Sbjct: 239 ASVTAASLPLIVECINEWRASRREI 263


>U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical
           protein R04A9.2 protein.
          Length = 1057

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
 Frame = -2

Query: 476 GVNALTEEQKAEITKSSLPLIAEC--SKEFSVNQGDIDAAK--KLGDPSGLNSCFVGCFM 309
           G NALT E ++E+T+    +  +C  +++F +        K   +  P  +     G F+
Sbjct: 244 GPNALTLENRSELTRIIEAITDQCLHNEKFLLYSSGTFPTKGGDIASPDEVTLIKSG-FV 302

Query: 308 KKAGIINASGLFDVAATIEKSKKYLTSEEDLKAF 207
           K   I++  G+ D   T++ +K     +  L  F
Sbjct: 303 KTTKIVDRDGVPDAIMTVDTTKSPFYKDTSLLKF 336


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
            isoform a protein.
          Length = 1409

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 239  YLTSEEDLKAFEK-LTEMCAPENDKPVSDSXQGLRKSKTSPRL 114
            Y  ++ED++ FE     +CA   D+ VS + Q       SPR+
Sbjct: 1075 YGDTDEDVRDFEDHYQRLCASNRDRAVSFNQQSSTNGSISPRV 1117


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
            isoform b protein.
          Length = 1444

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 239  YLTSEEDLKAFEK-LTEMCAPENDKPVSDSXQGLRKSKTSPRL 114
            Y  ++ED++ FE     +CA   D+ VS + Q       SPR+
Sbjct: 1110 YGDTDEDVRDFEDHYQRLCASNRDRAVSFNQQSSTNGSISPRV 1152


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 239  YLTSEEDLKAFEK-LTEMCAPENDKPVSDSXQGLRKSKTSPRL 114
            Y  ++ED++ FE     +CA   D+ VS + Q       SPR+
Sbjct: 1075 YGDTDEDVRDFEDHYQRLCASNRDRAVSFNQQSSTNGSISPRV 1117


>U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory
           abnormality protein10 protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = -2

Query: 473 VNALTEEQKAEITKSSLPLIAECSKEFSVNQGDIDAAKKL-GDPSGLNSCFV 321
           ++AL+EEQ+  ++++   LI +CS  F+    DID   +L  DP+   +CFV
Sbjct: 388 MSALSEEQRILMSQAKHNLIHKCS--FNGKPCDIDQDFELVADPT-FGNCFV 436


>L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degenerin
           protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = -2

Query: 473 VNALTEEQKAEITKSSLPLIAECSKEFSVNQGDIDAAKKL-GDPSGLNSCFV 321
           ++AL+EEQ+  ++++   LI +CS  F+    DID   +L  DP+   +CFV
Sbjct: 388 MSALSEEQRILMSQAKHNLIHKCS--FNGKPCDIDQDFELVADPT-FGNCFV 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,556,786
Number of Sequences: 27780
Number of extensions: 213881
Number of successful extensions: 609
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)