Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_P01
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 215 4e-57
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 214 1e-56
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.53
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 29 0.93
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.1
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 2.8
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 3.8
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 5.0
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 5.0
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 5.0
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 6.6
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 8.7
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 8.7
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.7
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 8.7
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 215 bits (526), Expect = 4e-57
Identities = 107/239 (44%), Positives = 149/239 (62%), Gaps = 2/239 (0%)
Frame = -3
Query: 745 YRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXX 566
YRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 49 YRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARR 108
Query: 565 XXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVD 386
+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA D
Sbjct: 109 ALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASD 168
Query: 385 GGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 206
GGL +PHS RFPG+D E+++ + E R +I+G HVAEYM L DDE+ +++QFS I
Sbjct: 169 GGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIA 228
Query: 205 LGVTADAIEAIYKKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 35
G+ +D +E IY +A+ IR DPS +K K+ + ++ +RKLT ERK R K
Sbjct: 229 DGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKERFNAK 287
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 214 bits (522), Expect = 1e-56
Identities = 107/239 (44%), Positives = 148/239 (61%), Gaps = 2/239 (0%)
Frame = -3
Query: 745 YRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXX 566
YRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 49 YRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARR 108
Query: 565 XXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVD 386
+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA D
Sbjct: 109 ALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASD 168
Query: 385 GGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 206
GGL +PHS RFPG+D E+++ + E R +I+G HVAEYM L DDE+ +++QFS I
Sbjct: 169 GGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIA 228
Query: 205 LGVTADAIEAIYKKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 35
G+ +D +E IY +A+ IR DPS +K K+ + + +RKLT ERK R K
Sbjct: 229 DGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKERFNAK 287
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.5 bits (63), Expect = 0.53
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -3
Query: 184 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 26
IE KK+ + AD KKE K+ K+ + +KRK +E K+KK S
Sbjct: 451 IEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKS 503
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 28.7 bits (61), Expect = 0.93
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 157 EAIRADPSHKKKELKKDSVKQKRWNKRKL-TLAERKNRIKQKKAS 26
E I PS K+K+ KK+ K+K KR +E + K+KK S
Sbjct: 452 ETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKS 496
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = -3
Query: 253 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 92
+++++S ++ +K ++ V +KK +E IR+D LK+D K++
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKER 1076
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -3
Query: 196 TADAIEAIYKK-AHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFX 20
T D I+ + K+ E ++ + ++ +LKK + + +K K+++ E+K R Q K +
Sbjct: 1636 THDNIDDMIKQQVEEKLKENSANFDVKLKKVVAETEFRSKAKISVYEKKTRDLQNKITQL 1695
Query: 19 QET 11
+ET
Sbjct: 1696 EET 1698
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 559 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 651
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 187 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 74
++E+ K EA + + +KKE KK+ K+K+ K K
Sbjct: 430 SVESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK 466
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -3
Query: 169 KKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERKNRIKQKKASFXQE 14
+ A E R + + + K LKK + ++KR K+ K AE K R+++++A + ++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEK-RLQKERAKYAKQ 760
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 5.0
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -3
Query: 256 EQDDEDSFKRQFSKYIKLGVTADA--IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 83
E+ + S K++ K G D +E I KK + HKKK+ + S K+K +
Sbjct: 166 EKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKK------EHKKKDKESSSKKRKSGS 219
Query: 82 KRKLTLAERKNRIKQKKAS 26
K ++K ++K K S
Sbjct: 220 SDKEEKKKKKIKLKDKPES 238
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -3
Query: 196 TADAIEAIYKKAHEAIRADPSHKKKELK 113
TA IEA+YKKA+ I+ D +H K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -3
Query: 166 KAHEAIRADPSHKK-KELKKDSVKQKRWNKRK-LTLAERKNRIKQKKASFXQETA 8
K E I + K+ +ELKK K+K+ +K+K L LA+ + R +++ ++ A
Sbjct: 571 KLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAA 625
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.4 bits (53), Expect = 8.7
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = -3
Query: 322 FNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRA 143
FNA R+ + A+ D E F + G A+ +IY+ + E IR+
Sbjct: 363 FNASGERSESANVETAQVW----DDREQYFFYEVFPNFNEGSIAEMKSSIYESSQEGIRS 418
Query: 142 DPSHKKKE 119
+ KKE
Sbjct: 419 SSENNKKE 426
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = -3
Query: 124 KELKKDSVK----QKRWNKRKLTLAERKNRIKQKKASFXQETAGS 2
++++ D+VK + R ++RKL AERK R K +K + E S
Sbjct: 106 EKMELDAVKGRKVESRVDRRKLEKAERKIRAKWEKRTIKAEYESS 150
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 277 AEYMRSLEQDDEDSFKRQFSKYIK 206
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 169 KKAHEAIRADPSHKKKE--LKKDSVKQKRWNKRKLTLAERKNRIKQKKA 29
KK E A S K+ E KKD+ + ++W+K T + + K+K A
Sbjct: 5 KKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAA 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,596
Number of Sequences: 5004
Number of extensions: 56126
Number of successful extensions: 261
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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