Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_O19
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    29   0.86 
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    27   2.6  
SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.5  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -1

Query: 395 WFLQSPPSLKPRILLLSSWMLLTVSPSTL 309
           + L++PPS++PR++  + W++    P+ L
Sbjct: 284 FILEAPPSMQPRLIQFTRWVVDKADPNFL 312


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 596 YRPK*TNWWCCFQSSRSPSPSQAWWLLWPTALSCLEL 486
           Y P   +WW C++ S+     Q+ W +   A  C  L
Sbjct: 146 YLPTTVSWWVCYEESKKYLQKQSNWDISVIAPICSAL 182


>SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 563 FQSSRSPSPSQAWWLLWPTALSCLELVRCPSTAPVWSTDR 444
           + +S +PS +Q+  +L    +  + +VRCPS  P++ T R
Sbjct: 56  YLNSAAPSKAQSHPVLLAAGVGGI-VVRCPSRKPIYRTTR 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,307
Number of Sequences: 5004
Number of extensions: 38028
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)