Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_O18
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 696 RRGQRTLPLVRAFSQLGTCPDL*DGPSISASSA 598
           +RG+   P V   SQ G+ P     PS + SSA
Sbjct: 610 KRGKYEEPTVGEISQDGSSPHFHQSPSQNHSSA 642


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +3

Query: 669 PMAKFFGLFSXRGFTIFLGSTFLTTNGAAXTFFPTFFL 782
           P+ K +G ++  GF       FLT +     F    F+
Sbjct: 189 PLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFI 226


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 410 STKEAQHHPIRHKHSH 363
           ST    HH + H HSH
Sbjct: 410 STPGPHHHTMGHGHSH 425


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +3

Query: 669 PMAKFFGLFSXRGFTIFLGSTFLTTNGAAXTFFPTFFL 782
           P+ K +G ++  GF       FLT +     F    F+
Sbjct: 189 PLLKVWGRYTTEGFLTTCSFDFLTDDEDTKVFVTCIFI 226


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 583 EVQPSGAGCGYTWAILQIWTS 645
           ++ P   G GY   +L  WT+
Sbjct: 92  KIAPIFKGIGYATCVLSCWTN 112


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 583 EVQPSGAGCGYTWAILQIWTS 645
           ++ P   G GY   +L  WT+
Sbjct: 145 KIAPIFKGIGYATCVLSCWTN 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,159
Number of Sequences: 438
Number of extensions: 3741
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)