Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_O15
(591 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 69 6e-12
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 52 4e-07
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 45 7e-05
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 44 1e-04
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 44 2e-04
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 43 3e-04
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 42 8e-04
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 39 0.006
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 38 0.008
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 36 0.041
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 35 0.072
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 35 0.095
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 35 0.095
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 35 0.095
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 35 0.095
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 35 0.095
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 35 0.095
AY095039-1|AAM11367.1| 1710|Drosophila melanogaster LD28380p pro... 33 0.38
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 33 0.38
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 33 0.38
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 33 0.38
AE014134-2294|AAF53256.2| 1710|Drosophila melanogaster CG16972-P... 33 0.38
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 68.5 bits (160), Expect = 6e-12
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 1/186 (0%)
Frame = +2
Query: 2 WPCRXIVPKKHDLIYLLNKHSPVVVALSETWLKPGYLFKVP-GYTCLRDDRYDGYGGVAL 178
W + + L+ L+ K+SP +++L ET ++ P Y L + + +GGV L
Sbjct: 8 WNLKGYLNNYSHLLILIKKYSPHIISLQETHIQYTNNIPTPINYKLLTNIATNRFGGVRL 67
Query: 179 LVRNSIDFSRISFSSLISNDAINIVGIKIYNISIVSIYLARXXXXXXXXXXXXXXXXXXX 358
LV SI + ++ + I AINI K+ ++I S Y++
Sbjct: 68 LVHKSIQHTVLNITIDIEAIAINIES-KL-KLNIFSTYISPTKNITNQTLHNTFNIQQTP 125
Query: 359 XXXXGDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPXAVDLSI 538
GDFN H +G TT+ G +D +L LLN SPT + N +DL++
Sbjct: 126 SLITGDFNGWHHPWGSPTTNKRGKITHRFIDNMHLILLNDKSPTHFSTHNTYTH-IDLTL 184
Query: 539 CTPDLA 556
C+P LA
Sbjct: 185 CSPILA 190
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 52.4 bits (120), Expect = 4e-07
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Frame = +2
Query: 2 WPCRXIVPKKHDLIYLLNKHSPVVVALSETWLKPGYLFKVPGYTCLRDDRYDGY-GGVAL 178
W R + K+ +LI L + + ++ETWL F +P YT R+DR + GGVA+
Sbjct: 17 WNARAVRNKRIELIKFLENNHIHIALINETWLTHSDRFNIPEYTIYRNDRKESRGGGVAI 76
Query: 179 LVRNSIDFSRISF--SSLISNDAINIVGIKIYNISIVSIYLA 298
V N++ +I S +I N I I ++ I SIY A
Sbjct: 77 AVSNTLIHEQIPCIKSHVIENVGIQINTDSNSSLKIYSIYFA 118
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 45.2 bits (102), Expect = 7e-05
Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 5/190 (2%)
Frame = +2
Query: 2 WPCRXIVPKKHDLIYLLNKHSPVVVALSETWLKPGYL-FKVP----GYTCLRDDRYDGYG 166
W I ++L L+ H+P +V L ET L F P GY
Sbjct: 8 WNIHGIFNNYNELTLLIKDHAPDIVFLQETKLPCNSTNFICPKEYSGYFHNFSYNTSAKQ 67
Query: 167 GVALLVRNSIDFSRISFSSLISNDAINIVGIKIYNISIVSIYLARXXXXXXXXXXXXXXX 346
G+ +L++ ++ + + +S I A+ + ++ NI V+ Y+
Sbjct: 68 GIGVLIKRNVPHTYRNINSSILCSALQLNFEQVINI--VNAYIPPSQIFSSSDISEILQN 125
Query: 347 XXXXXXXXGDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPXAV 526
GD N ++G T+T G + ++ +L +LN GSPT + N +
Sbjct: 126 LNGSTILLGDLNSWSPLWGSPRTNTRGKKIETVILENSLIVLNDGSPTHLSTHNTFTH-I 184
Query: 527 DLSICTPDLA 556
D+S+ +P +A
Sbjct: 185 DISLISPQIA 194
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 44.4 bits (100), Expect = 1e-04
Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 7/186 (3%)
Frame = +2
Query: 2 WPCRXIVPKKHDLIYLLNKHSPVVVALSETWLKPGYLFKVPGYTCLRDDR----YDGYGG 169
W I K D+ + ++ ++E LK G K+ GY R + GG
Sbjct: 9 WNANGISRKAKDVELFAHNKKVDILLVTELRLKRGETVKIYGYAYYPAYRPSLNNNSVGG 68
Query: 170 VALLVRNSIDF--SRISFSSLISNDAINIVGIKIYNISIVSIYLARXXXXXXXXXXXXXX 343
VA+ VR ++ R+ + I ++ V + ++ +IY +
Sbjct: 69 VAVFVRTTLRHFPQRVIETRHIQLSSVK-VATGLGDLQFSAIYCSPSTRIEERHFTDIIR 127
Query: 344 XXXXXXXXXGDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRT-KPNEKPX 520
GD+N H ++G G L E L + +L TGSPTR P+ P
Sbjct: 128 ACGQRYLVGGDWNARHWLWGDTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPS 187
Query: 521 AVDLSI 538
+D ++
Sbjct: 188 CIDFAV 193
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 44.0 bits (99), Expect = 2e-04
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 WPCRXIVPKKHDLIYLLNKHSPVVVALSETWLKPGY---LFKVPGYTCLRDDRYDGYGGV 172
W + K ++ + +H V+ LSET K LF YT + GG
Sbjct: 9 WNADGVSTKLPEVECFVRRHEIDVLLLSETHCKGAETPKLFGFVAYTANDPSGGNAKGGA 68
Query: 173 ALLVRNSI-DFSRISFSSLISNDAINIVGIKIYNISIVSIYLARXXXXXXXXXXXXXXXX 349
A+L++NS+ F ++ A ++ + IS ++Y
Sbjct: 69 AILIKNSLAHFPLTPIATAKVQLAPAVIETALGPISFGAVYCPPRFAWTTDEFKDILEEF 128
Query: 350 XXXXXXXGDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTR 493
GD+N H ++G G ++ G+ L ++ + L TG PTR
Sbjct: 129 QTKFIVAGDWNASHWLWGAGRSNQRGIALANLVLNSEVDSLATGGPTR 176
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 43.2 bits (97), Expect = 3e-04
Identities = 38/183 (20%), Positives = 70/183 (38%), Gaps = 4/183 (2%)
Frame = +2
Query: 2 WPCRXIVPKKHDLIYLLNKHSPVVVALSETWLKPGYLFKVPGYTCLRDDRYDGY--GGVA 175
W R + +L L+ H V+ +ET ++ G +PGY G GG A
Sbjct: 11 WNARGLTRGSEELRIFLSDHDIDVMLTTETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSA 70
Query: 176 LLVRNSIDFSRISFSSLISNDAINI-VGIKIYNISIVSIYLARXXXXXXXXXXXXXXXXX 352
+++++ + S ++ S + + + +++ ++YL
Sbjct: 71 VIIKSRLCHSPLTPISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWIVDDFKSMFAALG 130
Query: 353 XXXXXXGDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRT-KPNEKPXAVD 529
GD+N H +G + G L E++ +L TG PT + P P A+D
Sbjct: 131 NKFIAGGDYNAKHAWWGNPRSCPRGKMLQEVIAHGQYQVLATGEPTFYSYNPLLTPSALD 190
Query: 530 LSI 538
I
Sbjct: 191 FFI 193
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 41.5 bits (93), Expect = 8e-04
Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 3/166 (1%)
Frame = +2
Query: 2 WPCRXIVPKKHDLIYLLNKHSPVVVALSETWLKPGYLFKVPGYTCLRDDRYDGY--GGVA 175
W R + +L L+ H V+ +ET ++ G +PGY G GG A
Sbjct: 11 WNARGLTRGSEELRIFLSDHDIDVMLTTETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSA 70
Query: 176 LLVRNSIDFSRISFSSLISNDAINI-VGIKIYNISIVSIYLARXXXXXXXXXXXXXXXXX 352
+++++ + S ++ S + + + +++ ++YL
Sbjct: 71 VIIKSRLCHSPLTPISTNDRQIARVHLQTSVGTVTVAAVYLPPAERWIVDDFKSMFAALG 130
Query: 353 XXXXXXGDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPT 490
GD+N H +G + G L E++ +L TG PT
Sbjct: 131 NKFIAGGDYNAKHAWWGNPRSCPRGKMLQEVIAHGQYQVLATGEPT 176
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 38.7 bits (86), Expect = 0.006
Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 6/185 (3%)
Frame = +2
Query: 2 WPCRXIVPKKHDLIYLLNKHSPVVVALSETWLKPGYLFKVPGYTCLRDDRYDG--YGGVA 175
W + +L + + + V+ LSET L F +PGY + DG +GG
Sbjct: 9 WNANGVSRHTQELTQFIYEKNIDVMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTG 68
Query: 176 LLVRNSIDFSRI-SFSSLISNDAINIVGIKIYNISIVSIYLARXXXXXXXXXXXXXXXXX 352
+L+RN I + +F + + + ++ ++Y
Sbjct: 69 ILIRNRIKHHHLNNFDKNYLQSTSIALQLNNGSTTLAAVYCPPRFPISEDQFMEFFNTLG 128
Query: 353 XXXXXXGDFNCHHQMFGCGTTDTNGVHLVEILDL--QNLCLLNTGSPTR-RTKPNEKPXA 523
GD+N H +G G L L L ++ G PT P + P
Sbjct: 129 DRFIAAGDYNAKHTHWGSRLVSPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDL 188
Query: 524 VDLSI 538
+D +I
Sbjct: 189 IDFAI 193
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 38.3 bits (85), Expect = 0.008
Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 6/185 (3%)
Frame = +2
Query: 2 WPCRXIVPKKHDLIYLLNKHSPVVVALSETWLKPGYLFKVPGYTCLRDDRYDG--YGGVA 175
W + +L + + + V+ LSET L F +PGY + DG +GG
Sbjct: 9 WNANGVSRHTQELTQFIYEKNIDVMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTG 68
Query: 176 LLVRNSIDFSRI-SFSSLISNDAINIVGIKIYNISIVSIYLARXXXXXXXXXXXXXXXXX 352
+L+RN I + +F + + + ++ ++Y
Sbjct: 69 ILIRNRIKHHHLNNFDKNYLQSTSIALQLNNGSTTLAAVYCPPRFPISEDQFMEFFNTLG 128
Query: 353 XXXXXXGDFNCHHQMFGCGTTDTNGVHLVEILDL--QNLCLLNTGSPTR-RTKPNEKPXA 523
GD+N H +G G L L L ++ G PT P + P
Sbjct: 129 DRFIAAGDYNAKHTHWGSRLVTPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDL 188
Query: 524 VDLSI 538
+D +I
Sbjct: 189 IDFAI 193
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 35.9 bits (79), Expect = 0.041
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 371 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PXAVDLSIC 541
GD+N H+ +GC G L + + ++ ++ TGS T K P A+D SIC
Sbjct: 164 GDWNAKHRQWGCIRACQRGAALYDAIQADSMAEIVATGSATHFPHDTRKSPSAIDFSIC 222
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 35.1 bits (77), Expect = 0.072
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +2
Query: 113 FKVPGYTCLRDDRYDGY-GGVALLVRNSIDFSRISF--SSLISNDAINIVGIKIYNISIV 283
F +P YT R+DR + GGVA+ V N++ +I S +I N I I ++ I
Sbjct: 2 FNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQINTDSNSSLKIY 61
Query: 284 SIYLA 298
SIY A
Sbjct: 62 SIYFA 66
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 34.7 bits (76), Expect = 0.095
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 371 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PXAVDLSIC 541
GD+N H+ +GC G L E + + ++ TG T K P A+D SIC
Sbjct: 152 GDWNAKHRQWGCTRACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 34.7 bits (76), Expect = 0.095
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 371 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PXAVDLSIC 541
GD+N H+ +GC G L E + + ++ TG T K P A+D SIC
Sbjct: 36 GDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 94
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 34.7 bits (76), Expect = 0.095
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 371 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PXAVDLSIC 541
GD+N H+ +GC G L E + + ++ TG T K P A+D SIC
Sbjct: 152 GDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 34.7 bits (76), Expect = 0.095
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 371 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PXAVDLSIC 541
GD+N H+ +GC G L E + + ++ TG T K P A+D SIC
Sbjct: 152 GDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 34.7 bits (76), Expect = 0.095
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 371 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PXAVDLSIC 541
GD+N H+ +GC G L E + + ++ TG T K P A+D SIC
Sbjct: 114 GDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 172
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 34.7 bits (76), Expect = 0.095
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 371 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PXAVDLSIC 541
GD+N H+ +GC G L E + + ++ TG T K P A+D SIC
Sbjct: 152 GDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>AY095039-1|AAM11367.1| 1710|Drosophila melanogaster LD28380p protein.
Length = 1710
Score = 32.7 bits (71), Expect = 0.38
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 183 TSNATPP*PSYLSSRKQVYPGTLNRYPGFNHVS 85
TSNA+PP PS+ + P LN GF VS
Sbjct: 969 TSNASPPNPSHSRQESHISPAPLNLIGGFGDVS 1001
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 32.7 bits (71), Expect = 0.38
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 371 GDFNCHHQMFGCGTTDTNGVHLVE-ILDLQNLCLLNTGSPTRRTKPNEK-PXAVDLSIC 541
GD+NC H+++G + G L + IL ++L ++ TG T +K P A+D +IC
Sbjct: 156 GDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHATHFPFDKKKQPSALDFAIC 214
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 32.7 bits (71), Expect = 0.38
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 371 GDFNCHHQMFGCGTTDTNGVHLVE-ILDLQNLCLLNTGSPTRRTKPNEK-PXAVDLSIC 541
GD+NC H+++G + G L + IL ++L ++ TG T +K P A+D +IC
Sbjct: 156 GDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHATHFPFDKKKQPSALDFAIC 214
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 32.7 bits (71), Expect = 0.38
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 371 GDFNCHHQMFGCGTTDTNGVHLVE-ILDLQNLCLLNTGSPTRRTKPNEK-PXAVDLSIC 541
GD+NC H+++G + G L + IL ++L ++ TG T +K P A+D +IC
Sbjct: 156 GDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHATHFPFDKKKQPSALDFAIC 214
>AE014134-2294|AAF53256.2| 1710|Drosophila melanogaster CG16972-PA
protein.
Length = 1710
Score = 32.7 bits (71), Expect = 0.38
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 183 TSNATPP*PSYLSSRKQVYPGTLNRYPGFNHVS 85
TSNA+PP PS+ + P LN GF VS
Sbjct: 969 TSNASPPNPSHSRQESHISPAPLNLIGGFGDVS 1001
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,441,136
Number of Sequences: 53049
Number of extensions: 404850
Number of successful extensions: 1012
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2379510885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -