Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_O11
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1208 - 27016400-27017176 32 0.50
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 32 0.50
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288... 31 0.66
12_02_0867 - 23828084-23828845,23828931-23829067,23829148-238293... 30 2.0
12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570... 30 2.0
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 30 2.0
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 29 3.5
09_02_0122 + 4523782-4523935,4524483-4524535 29 4.6
03_05_0931 - 28912700-28913056,28913245-28913319,28913424-289134... 29 4.6
02_02_0256 - 8362374-8363003 29 4.6
05_03_0428 + 13899295-13899669 28 6.1
03_02_0872 - 11983151-11983432,11983488-11983598,11983744-119840... 28 6.1
07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423 28 8.1
05_06_0290 - 26961926-26962423 28 8.1
04_01_0167 + 1864956-1865495 28 8.1
01_01_0694 + 5372779-5373429 28 8.1
>12_02_1208 - 27016400-27017176
Length = 258
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -3
Query: 465 ARARSTPSWSCEPTAGTPSAR--SGTSCAGTGSGRRWCTLTPTADA 334
AR SWS AGTP+AR T C+ G+GR C A A
Sbjct: 53 ARLDPGQSWSISVAAGTPAARIWPRTGCSFDGAGRGRCATGDCAGA 98
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 31.9 bits (69), Expect = 0.50
Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 4/159 (2%)
Frame = -2
Query: 538 VRDENYIPHQASDQHTETGMAVNFSAGAEHAQLELRADSGDAERAQRNVMRWDRKRKKMV 359
VR + Y +D T N H+ + E + +NV D++++
Sbjct: 506 VRKDRYSDESETDSETYVKKKKNLPKSYHHSDKPAQRGKEKEENSGKNV---DKRKRHDT 562
Query: 358 HVDPDGGRKMIRTESGFRVPASFRSGR-FDDWKKRNLAHDHS---DDEPQAQTNKRKPAS 191
D D + + R + + R + + + D+S D E ++ R+
Sbjct: 563 DSDSDSHARERKRHLDARASLAAQKKRSVTSSSESSESSDYSSSSDSESDVSSDSREDRK 622
Query: 190 EFRPHWVKHNERVAKKAAESKSREFRDKQQIVKERMRKD 74
R +KH+E KK ++ + R+ +KQ+ +ER D
Sbjct: 623 SARQ--LKHDELERKKRSQDEKRKELEKQKQEEERKELD 659
>02_02_0473 - 10727908-10728052,10728367-10728440,10728660-10728818,
10729606-10729774,10730216-10730355,10730469-10730879,
10731055-10731334,10731508-10731571,10731995-10733281,
10733363-10733822,10733988-10734356
Length = 1185
Score = 31.5 bits (68), Expect = 0.66
Identities = 17/35 (48%), Positives = 17/35 (48%)
Frame = -3
Query: 471 TSARARSTPSWSCEPTAGTPSARSGTSCAGTGSGR 367
T R R T SWS TA RS TS GTG R
Sbjct: 970 TQRRGRRTSSWSGTTTASRAYRRSRTSTYGTGFAR 1004
>12_02_0867 -
23828084-23828845,23828931-23829067,23829148-23829354,
23830226-23831027
Length = 635
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = -3
Query: 654 SSHTAELSRRRDKTKS---YRPKVNLMISLLPLNLRRKRRDQCEMRTTYRIKQATSTLKQ 484
+ H++E + RD +S Y N +S L+LR + Q R RIK+ +TL Q
Sbjct: 406 ADHSSESAHGRDSRESSPDYTHDANYPVSPRDLSLRLHKVIQ--QRLEERIKELETTLAQ 463
Query: 483 AWR*TSARARSTPSWSCEPTAGTPSARS 400
+ T + +T CE T + S
Sbjct: 464 SEMQTQVQVMATEQILCERTCSDSDSGS 491
>12_01_0671 -
5702051-5702159,5702493-5703216,5703910-5704476,
5704654-5704873,5705303-5707207
Length = 1174
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -3
Query: 663 KPRSSHTAELSRRRDKTKSYRPKVNLMISLLPLNLRRKRRDQ-CEMRTTYRIKQATSTLK 487
+ R SH S +R+K K + + +S + LRRK C +T +R K++ +LK
Sbjct: 268 RSRRSHVPGYSSKRNKCKGSKRSYSPSLSDI---LRRKGSGLLCGSQTLHRKKRSFGSLK 324
Query: 486 QAWR*TSARARSTPSWSCE 430
TSA S SC+
Sbjct: 325 WGHSKTSAHGMSLLDGSCD 343
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 29.9 bits (64), Expect = 2.0
Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 5/150 (3%)
Frame = -2
Query: 511 QASDQHTETGMAVNFSAGAEHAQLELRADSGDAERAQRNVMR-WD-RKRKKMVHVDPD-G 341
Q D+H ETG H L L D R ++ W ++MV+VDP+ G
Sbjct: 893 QMYDKHHETG----------HCILSLHRDQHCYSRVLELIVNVWAFHSSRRMVYVDPETG 942
Query: 340 GRKMIRTESGFRVPASFRSGRFDDWKK--RNLAHDHSDDEPQAQTNKRKPASEFRPHWVK 167
+ +G R S + K +LA + +D P + K F +
Sbjct: 943 AMQEQHLLNGRRGQMSIQWFSLATLKSMDEDLAEEFDEDHPDRRWLWPKTGEVFWQGVYE 1002
Query: 166 HNERVAKKAAESKSREFRDKQQIVKERMRK 77
+ ++ E + ++ +DK Q +K+R R+
Sbjct: 1003 RERNMRQQEKERRKQQSKDKIQRIKKRARQ 1032
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = -2
Query: 388 RWDRKRKKMV-HVDPDGGRKMIRTESGFRVPASFRSGRFDDWKKRNLAHDHSDDEPQAQT 212
R RKR + D G + + G R S SGR D + + HD+ DD ++
Sbjct: 533 RGGRKRNRWATRSDRGGSHSELDSRYGGRDGLSGSSGRLDS-SRSSRRHDYGDDGRSRRS 591
Query: 211 NKRKPASEFRPHWVKHNERVAKKAAESKSR 122
+ + S R +++ + S+SR
Sbjct: 592 GRGRSRSRSRSDSDRYSRSPKRSRRHSRSR 621
>09_02_0122 + 4523782-4523935,4524483-4524535
Length = 68
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 139 PLFSLRVRCASPSADGTPTLVSFYLFVLAVRRRSGRARGCV 261
P +R CA S DG P S+++F LA R S G V
Sbjct: 21 PQARVRRTCAGSSCDGGPPTASWWVFELARRGASKAIMGYV 61
>03_05_0931 -
28912700-28913056,28913245-28913319,28913424-28913497,
28913604-28913691,28913785-28913936,28914050-28914209,
28914303-28914458,28914566-28914784,28915390-28915650,
28917183-28917389,28917488-28917619
Length = 626
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 558 RRKRRDQCEMRTTYRIKQATSTLKQAWR*TSARARSTPSWSCEPT-AGTPSARSGTSCAG 382
RR+ R+Q ++RT + K+A LK+ + RA + S + A PS RS + +G
Sbjct: 504 RRRLREQKKLRTLFSEKEAMPHLKRPGS-SFGRATEPCNMSRKRVDAAPPSVRSSSGSSG 562
Query: 381 TGSG 370
+ G
Sbjct: 563 SSGG 566
>02_02_0256 - 8362374-8363003
Length = 209
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 302 DPEPALSTNHLASAVGVNVHHLLPLPVPAHDVPLRAL 412
D EP ++ SAV V V LP P+P H VP A+
Sbjct: 62 DQEPTVARPAAPSAVVVVVAPPLPPPLPIHRVPAAAV 98
>05_03_0428 + 13899295-13899669
Length = 124
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 453 STPSWSCEPTAGTPSARSGTSCAGTGSGRRWCTLTPTADAR 331
+T + CEPT T ++ G S GS R W T + R
Sbjct: 54 TTRAVGCEPTIRTYNSLIGGSATSGGSRRHWTCSTSSRSCR 94
>03_02_0872 -
11983151-11983432,11983488-11983598,11983744-11984007,
11984038-11984163,11984257-11984481,11984757-11985311,
11985390-11985695,11985815-11986369
Length = 807
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2
Query: 532 DENYIPHQASDQHTET 485
DENY+P QASD ET
Sbjct: 767 DENYVPPQASDDQPET 782
>07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423
Length = 266
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Frame = -2
Query: 379 RKRKKMVHVDPDGGRKMIRTESGFRVPASFRSGRFDD-WKKRNLAHDHSDDEPQAQTNKR 203
R ++ + D K R G P S RS DD W++ L + S E + K+
Sbjct: 171 RSQENEPNADTQVEEKWERRVQGPEKPVSLRSRSPDDYWRREALDGEPSSPELHKKKEKK 230
Query: 202 KPASEFRPHWVKHNERVAKKAAESKSREFRDKQQ 101
K S + + ++ KK ++ + +Q
Sbjct: 231 KEKSSEKKDRKERRKKKDKKKSKHRHHHHHKSRQ 264
>05_06_0290 - 26961926-26962423
Length = 165
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 507 QATSTLKQAWR*TSARARSTPSWSCEPTAGTPSARSGTSCAGTGSGR 367
Q S+L AW+ R + P S + G+ R+G S G G GR
Sbjct: 108 QRPSSLGAAWQERERRQHADPPASTLGSGGSGLRRAGASRHGGGGGR 154
>04_01_0167 + 1864956-1865495
Length = 179
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 543 PFFFFLDLTAVTISSSLPSA 602
PFFFFL + A ++++++P A
Sbjct: 11 PFFFFLSVAACSVTAAMPGA 30
>01_01_0694 + 5372779-5373429
Length = 216
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -3
Query: 501 TSTLKQAWR*TS---ARARSTPSWS-CEPTAGTPSARSGTSCAGTGSGRRWCTLTPTAD 337
T+T +AW S A R P + C P + PSA + T+ A GS R+C TP D
Sbjct: 36 TATADEAWALLSDFLAFHRWHPRVAKCRPAS--PSAAASTAAAPPGSVVRYCEGTPRGD 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,550,544
Number of Sequences: 37544
Number of extensions: 331193
Number of successful extensions: 1667
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1664
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -