Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_O08
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 97 8e-22
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 0.44
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 2.4
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 3.1
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch... 25 4.1
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.5
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 9.6
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 24 9.6
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 24 9.6
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 24 9.6
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 97.1 bits (231), Expect = 8e-22
Identities = 37/64 (57%), Positives = 46/64 (71%)
Frame = -1
Query: 263 RFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTF 84
RFPN NQT+HC+QSY+D+ RC K +GE + PC F Y+SLCP EWV++WD QR GTF
Sbjct: 20 RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTF 79
Query: 83 AGRI 72
I
Sbjct: 80 PAPI 83
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 0.44
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = -2
Query: 235 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 77
T++ V TST A NT+ + S S P++ ST TS P S V
Sbjct: 2353 TSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2405
Score = 27.5 bits (58), Expect = 0.78
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = -2
Query: 235 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 77
T++ V TST A NT+ S S P++ ST TS P S V
Sbjct: 1117 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 1169
Score = 27.5 bits (58), Expect = 0.78
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = -2
Query: 235 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 77
T++ V TST A NT+ S S P++ ST TS P S V
Sbjct: 2761 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 2813
Score = 25.4 bits (53), Expect = 3.1
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -2
Query: 235 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 77
T++ V TST NT+ S S P++ ST TS P S V
Sbjct: 1177 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1229
Score = 25.4 bits (53), Expect = 3.1
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -2
Query: 235 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 77
T++ V TST NT+ S S P++ ST TS P S V
Sbjct: 1489 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1541
Score = 23.8 bits (49), Expect = 9.6
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -2
Query: 235 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 77
T++ V TST NT+ S S P++ ST +S P S V
Sbjct: 1357 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 1409
Score = 23.8 bits (49), Expect = 9.6
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -2
Query: 235 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 77
T++ V TST NT+ S S P++ ST +S P S V
Sbjct: 2197 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 2249
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 2.4
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -1
Query: 302 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRG-EKYEPCYYFKRVY 147
++ ++ +++ DP P + + +C +Y + +K+RG +KY+P + +Y
Sbjct: 183 ETQSEKRSSQTDPSLPFKTNSLNCDVTYEEGPLTKKLRGPKKYKPSHSSWDIY 235
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.4 bits (53), Expect = 3.1
Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = -2
Query: 277 HLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNT-NHATISRECTGLSAPMSG--STSGT 107
H ST + T T T T T T R A NT N +T + G SA S T
Sbjct: 141 HSSTTANRTTSTPTTTTART-TRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTGTGAG 199
Query: 106 TSAPKAPSPV 77
T A SPV
Sbjct: 200 TGASHRSSPV 209
>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 186
Score = 25.0 bits (52), Expect = 4.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 192 NFLATVEVHVTLVAVPRLILVREPWVERCCFEVGGRFDHLRHIAYYYLAVSWI 350
N+ +H+ L+A RLI P V R E+ +L ++A ++ W+
Sbjct: 40 NYKGAWVIHIVLIAALRLIFHAIPSVSR---ELAWTLTNLTYMAGSFIMFHWV 89
>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 72
Score = 24.6 bits (51), Expect = 5.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 107 CPTCRPTHWGRETCTL 154
CPT PT W +CT+
Sbjct: 3 CPTHGPTTWNPHSCTV 18
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 5.5
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = -2
Query: 304 SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMS 125
S+ P ++ +S+ S + T + + +S+ + ++ ++ +TIS + S+P S
Sbjct: 297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFS-SSPTSSSSTIS---SSSSSPSS 352
Query: 124 GSTSGTTSAPKAPS 83
S S TTS+ K+ S
Sbjct: 353 SSFSSTTSSSKSSS 366
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 139 SAPMSGSTSGTTSAPKAPSPVGFRS 65
+AP + T TT P A SP+ ++S
Sbjct: 433 NAPAAPGTMYTTPLPTANSPIAYQS 457
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 23.8 bits (49), Expect = 9.6
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -2
Query: 286 SKQHLSTH-GSLT-KIRRGTATKVTWTST 206
SK+ + H GS++ + RRG T+ WT+T
Sbjct: 1192 SKELVELHNGSMSCQSRRGVGTRFMWTAT 1220
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 23.8 bits (49), Expect = 9.6
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Frame = -1
Query: 380 IVWLPFSIEINPRNG*IIISNMPEMIKS--------PADLKTAPFDPRFP 255
+ W P+ R G I++ + +M +S D T PFD FP
Sbjct: 261 LFWHPYGSYERLRQGAILVKEVNKMAQSHPSWPVFIAGDFNTEPFDTNFP 310
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 23.8 bits (49), Expect = 9.6
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = -2
Query: 301 NRPPTSKQHL---STHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAP 131
NRPP +T + T K T + ++ + T+ A+ + SAP
Sbjct: 1024 NRPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAP 1083
Query: 130 MSGSTSGTTSAPKAPSP 80
++ + S ++ P P P
Sbjct: 1084 VANNVSKPSAVPPPPPP 1100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,372
Number of Sequences: 5004
Number of extensions: 32064
Number of successful extensions: 100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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