Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_O07
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    27   3.7  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   4.8  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    26   6.4  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    25   8.5  

>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 97  YGFHIFPSYFLTYFIMQIIISYTCLLELAYNTCVN 201
           +GF +  +YF+ YF+   +   TC +   Y T +N
Sbjct: 154 WGFAVSWNYFINYFVTFPLELTTCAITFRYWTDIN 188


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 97  YGFHIFPSYFLTYFIMQIIISYTCLLELAYNTCVN 201
           +GF +  +YF+ YF+   +   TC +   Y T +N
Sbjct: 161 WGFAVGWNYFMNYFVTFPLELTTCAITFRYWTDIN 195


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 276 VIAIQTNCYFGLIG--FQTKLFITRKYSN*LCVFMYLY 383
           +++++  C F + G  F TK+F +R Y+N L VF  L+
Sbjct: 139 LMSMKLACEFLVAGGTFVTKVFRSRDYNNLLWVFKQLF 176


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 97  YGFHIFPSYFLTYFIMQIIISYTCLLELAYNTCVN 201
           +GF +  +YFL YF+   +   TC +   + T +N
Sbjct: 154 WGFAVSWNYFLNYFVTCPLELTTCAITFKFWTEIN 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,372
Number of Sequences: 5004
Number of extensions: 55835
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)