Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_O05
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    30   0.070
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   0.86 
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   2.6  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    24   4.6  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    24   4.6  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    24   4.6  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    23   8.1  

>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 30.3 bits (65), Expect = 0.070
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 175 QNSRG*KTIENPQ*TN*ASNHADHFQF*KNS*IIHLKNSSA 297
           ++S+G   IENP   N + NH+D+  F + S  +H +N  A
Sbjct: 31  RDSQGQLGIENPPKCNNSGNHSDNLGFIEQSETVHPENEKA 71


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 0.86
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 243  SLSILKEFIDYTLEEFIGRPN 305
            SLSIL+ FI+ +L EF   P+
Sbjct: 1378 SLSILRRFIETSLNEFFAEPD 1398


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 213 LWIFYSFLPP*ILRIAEVTLVN 148
           L +FY+F+PP       VTL+N
Sbjct: 277 LLVFYTFIPPRFTIQTSVTLIN 298


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 165 EVTLVNFMDQCSS*EAEYSTNGCNRVAAC 79
           EV   N MD+C +  +E    GC+ +  C
Sbjct: 259 EVICENLMDRCIASNSESCGIGCDNMTIC 287


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 46  ILLHYQQSSFFACSYPVTTISRIFCLSGTAL 138
           +L +  Q+  F CS  +T     FCLSG+ +
Sbjct: 89  VLRYPAQAMCFRCSLCMTVNDVYFCLSGSQI 119


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 5   LQPXSSASSNKKLAFFSIISSLHFLHAATLLQPLVEYSASQELHW 139
           L+P   +S+ +     S  S  H LHA TL    VEY+  + L W
Sbjct: 222 LEPFKYSSTTRHKV--STESIFHVLHAFTLFDTTVEYNI-EPLLW 263


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 150 NFMDQCSS*EAEYSTNGCNRVAAC 79
           N MD C + + E +  GC+ +  C
Sbjct: 261 NLMDNCIASDTETTGLGCDNMTVC 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,299,525
Number of Sequences: 5004
Number of extensions: 23431
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)