Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_O05
         (312 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2617|AAF53476.2| 1120|Drosophila melanogaster CG4587-PA...    27   3.7  
X89601-1|CAA61760.1|  665|Drosophila melanogaster CNG channel pr...    27   4.9  
AE013599-2229|AAF58033.1|  665|Drosophila melanogaster CG7779-PA...    27   4.9  

>AE014134-2617|AAF53476.2| 1120|Drosophila melanogaster CG4587-PA
           protein.
          Length = 1120

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 80  HAATLLQPLVEYSASQELHWSMKFTKVTS 166
           +A  + +P++ Y A   +HWS  F  V++
Sbjct: 333 YALVMARPMIMYQADHPVHWSPVFVAVST 361


>X89601-1|CAA61760.1|  665|Drosophila melanogaster CNG channel
           protein.
          Length = 665

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 1   YPPAQXISIIKQKTCILLHYQQSSFFACSYPV--TTISRIFCLSGTALVHEVYQSDFSYS 174
           YP A  I  +     +L+H+    +FA SY +  ++ S ++ L+GT   +   Q  + YS
Sbjct: 245 YPNAFRICKVVLAILVLIHWNACMYFAISYEIGFSSDSWVYNLNGTR--NNTLQRQYIYS 302


>AE013599-2229|AAF58033.1|  665|Drosophila melanogaster CG7779-PA
           protein.
          Length = 665

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 1   YPPAQXISIIKQKTCILLHYQQSSFFACSYPV--TTISRIFCLSGTALVHEVYQSDFSYS 174
           YP A  I  +     +L+H+    +FA SY +  ++ S ++ L+GT   +   Q  + YS
Sbjct: 245 YPNAFRICKVVLAILVLIHWNACMYFAISYEIGFSSDSWVYNLNGTR--NNTLQRQYIYS 302


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,539,058
Number of Sequences: 53049
Number of extensions: 239994
Number of successful extensions: 577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 610819518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)