Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_N23
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    58   1e-09
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    25   5.8  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   7.7  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
 Frame = -1

Query: 555 SIYQKVSDXLDCGVSMKWTAGSXDTLFGV--GAKYALDQXASLHAKINNKSLIGXGYQQK 382
           S Y +VS  ++ G ++ W A S      +   +KYALD+   +  KIN+  +    Y Q 
Sbjct: 190 SYYHRVSSDVEAGGNVTWDAASTANAITLELASKYALDKDTFVKGKINSAGVATLSYFQT 249

Query: 381 LRPGVTLTLSAAIDGQNFNAGGHKVGVAL 295
           +RPGVT+ L   +D Q      HK G++L
Sbjct: 250 VRPGVTVGLGLQLDTQRLGQPAHKAGLSL 278


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 534 DXLDCGVSMKWTAGSXDTLFGVGAKYALDQXASLHAKINNKSL 406
           D + CGV   W   + D L+G+G +  +    ++ A +  KSL
Sbjct: 349 DGVTCGVQWWWNNDTWDGLYGLGEQ--MSALEAIQAPLLLKSL 389


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 537 SDXLDCGVSMKWTAGSXDTLFGVG 466
           SD + CG    W  G+ D  +G+G
Sbjct: 408 SDGVTCGYMWYWNNGTWDDHYGLG 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,270
Number of Sequences: 5004
Number of extensions: 34384
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)