Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_N23
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182...    48   4e-06
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646...    43   2e-04
01_01_1200 - 9670109-9670165,9670569-9670664,9670886-9670969,967...    36   0.029
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172...    28   5.9  
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    28   5.9  

>05_06_0213 +
           26414613-26414695,26416907-26417077,26417983-26418219,
           26418543-26418572,26419248-26419282,26421680-26421747,
           26423067-26423126,26423310-26423399,26423487-26423695,
           26424083-26424383
          Length = 427

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 27/93 (29%), Positives = 46/93 (49%)
 Frame = -1

Query: 561 AGSIYQKVSDXLDCGVSMKWTAGSXDTLFGVGAKYALDQXASLHAKINNKSLIGXGYQQK 382
           A S Y KVS     G  +  +  S +     G ++ALD+  ++ A+ NN  +     Q +
Sbjct: 336 AASYYHKVSKTSAVGAELAHSFSSNENTLTFGTQHALDELTTVKARFNNFGMASALIQHE 395

Query: 381 LRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 283
            RP   +T+S  +D +  +    KVG++L L+P
Sbjct: 396 FRPKSLVTISTEVDTKAIDKSS-KVGLSLVLKP 427


>01_06_0491 -
           29763738-29764044,29764266-29764474,29764565-29764654,
           29764819-29764905,29765598-29765733,29766036-29766186,
           29766334-29766502
          Length = 382

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 23/79 (29%), Positives = 41/79 (51%)
 Frame = -1

Query: 519 GVSMKWTAGSXDTLFGVGAKYALDQXASLHAKINNKSLIGXGYQQKLRPGVTLTLSAAID 340
           G  +  +  + +     G ++ALD   ++ A+ NN  ++    Q + RP   LTLSA +D
Sbjct: 305 GAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGMVSALIQHEWRPKSFLTLSAEVD 364

Query: 339 GQNFNAGGHKVGVALELEP 283
            +  +    KVG++L L+P
Sbjct: 365 TKAIDKAS-KVGLSLVLKP 382


>01_01_1200 -
           9670109-9670165,9670569-9670664,9670886-9670969,
           9671050-9671118,9671892-9671993,9672807-9672872,
           9673791-9673841,9673953-9674048,9674141-9674279,
           9674343-9674424,9674528-9674723
          Length = 345

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = -1

Query: 555 SIYQKVSDXLDCGVSMKWTAGSXDTLFGVGAKYALDQXASLHAKINNKSLIGXGYQQKLR 376
           S  QKVS+ +       +   + D     G  Y L Q   L  KI+   ++    +++L 
Sbjct: 259 SYVQKVSEKVSLASDFMYNHMAKDVTASFGYDYMLRQ-CRLRGKIDTNGVVSALLEERLT 317

Query: 375 PGVTLTLSAAID 340
           PGV   LSA +D
Sbjct: 318 PGVNFVLSAELD 329


>11_01_0221 -
           1720952-1721164,1721351-1721428,1721836-1721895,
           1721996-1722099,1722214-1722372,1722668-1722794,
           1723469-1723636,1723789-1723899,1723989-1724142,
           1724308-1724643,1724753-1724937,1725040-1725138,
           1725275-1725538,1725674-1725850,1726249-1726542,
           1726649-1726816,1727473-1727817,1727901-1728070,
           1728171-1728321,1729193-1729262,1729353-1729537,
           1729896-1729989,1730094-1730212,1730558-1730617,
           1730744-1730830,1732348-1732434,1732622-1732730,
           1732822-1732900,1733067-1733154,1733328-1733392,
           1734287-1734439,1735231-1735337,1735419-1735501,
           1735643-1735733,1735812-1735948,1736118-1736207,
           1736301-1736468,1736875-1737057
          Length = 1805

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 362 LHCLLPSMDRTSMQVA 315
           LHCLLPS++R S Q A
Sbjct: 722 LHCLLPSINRNSSQAA 737


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 549 YQKVSDXLDCGVSMKWTAGSXDTLFGVG 466
           +QKV D LDCG+ +  T G    +  +G
Sbjct: 469 WQKVCDRLDCGLEINNTVGGMRKILSLG 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,651,119
Number of Sequences: 37544
Number of extensions: 227839
Number of successful extensions: 502
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)