Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_N23
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...    54   7e-08
AL132948-42|CAN86925.1|  131|Caenorhabditis elegans Hypothetical...    30   1.3  
AL132948-41|CAC51075.1|  129|Caenorhabditis elegans Hypothetical...    30   1.3  
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 27/91 (29%), Positives = 45/91 (49%)
 Frame = -1

Query: 555 SIYQKVSDXLDCGVSMKWTAGSXDTLFGVGAKYALDQXASLHAKINNKSLIGXGYQQKLR 376
           S+Y KV+  ++ G  + W  G     + +  KYA  +  ++ AK+N+ S +       L 
Sbjct: 193 SLYHKVASNVEVGTQLGWKVGGNGADYALATKYAPSRDLTVRAKVNSSSQVAVAATHSLS 252

Query: 375 PGVTLTLSAAIDGQNFNAGGHKVGVALELEP 283
           P + LTLS   +    +A  HK G+ LE +P
Sbjct: 253 PALKLTLSTQFNLAANDA--HKFGLGLEFDP 281


>AL132948-42|CAN86925.1|  131|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3b protein.
          Length = 131

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = -1

Query: 456 ALDQXASLHAKINNKSLIGXGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 283
           A+ +   L A+ N+ + +  G +QK   G+T TL  A D Q F+    + G+ + +EP
Sbjct: 33  AVSRIRVLLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 90


>AL132948-41|CAC51075.1|  129|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3a protein.
          Length = 129

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = -1

Query: 456 ALDQXASLHAKINNKSLIGXGYQQKLRPGVTLTLSAAIDGQNFNAGGHKVGVALELEP 283
           A+ +   L A+ N+ + +  G +QK   G+T TL  A D Q F+    + G+ + +EP
Sbjct: 31  AVSRIRVLLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEVEQDGIKVWIEP 88


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
           protein T16G12.1 protein.
          Length = 1890

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 404 MRDLLLILACRDAXWSSAYFAPTPNNVSXE 493
           MR  LL+L C    +S    AP PNNV  E
Sbjct: 1   MRRKLLLLLCFIGLFSLISTAPAPNNVGLE 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,805,628
Number of Sequences: 27780
Number of extensions: 196614
Number of successful extensions: 350
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)