Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_N18
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    29   0.69 
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    28   0.91 
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   2.1  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    26   3.7  

>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +2

Query: 131 TSTLKLKVNKRSKERRHLHVILERNTFTAYRPLVTSRLTLGSSEREEEA-N*FTSVAEGR 307
           T  L+ ++N++   R +       +   AYR  +  ++  G ++  EEA + F   A G+
Sbjct: 236 TGALRTEINEKEAYRLYKMAADLNHVQAAYRVAICLQMGFGVTQNTEEAIHYFFRAASGQ 295

Query: 308 ELGQSERLA 334
            +G   R+A
Sbjct: 296 HVGAMHRMA 304


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = -2

Query: 495 LECSRSPIMERSSLLAIRCPRSPAR*HQTSQRWFRHPRHT*GRRRACCSFGRPRASRSLC 316
           +E S+SP     S  A   P+ P    + S++W   PR   GR+ A  + GR +A   + 
Sbjct: 1   MESSKSPSEVEKSSSASPAPQKPMI--RVSKQWVVPPRPKPGRKPALDALGRRKA--PIK 56

Query: 315 PSSRPSATL 289
           P   P++ L
Sbjct: 57  PRPGPTSAL 65


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 385 STH--LRSPPRVLLIWPPTRKPLTLPQLTPLSNTGELI 278
           +TH  + SPP   ++   T +PL+ P + P SN+  L+
Sbjct: 154 NTHDSVNSPPSYGIMASATNQPLSHPTIVPSSNSSSLL 191


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 376 LRSPPRVLLIWPPTRKPLTLPQLTPL 299
           + SP ++ ++ PP   P +LPQL PL
Sbjct: 83  IASPRQMQVLTPPLSCPESLPQLEPL 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,770
Number of Sequences: 5004
Number of extensions: 38247
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)