Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_N17
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    29   1.1  
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    28   2.0  
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    28   2.0  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    27   3.4  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   4.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   6.0  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 551 TRPMYKGSPSSVSPPGNAPG-GTLDPLVGTQLFGPPTKIWY*GFPCSIPPHGT*AQP*EG 727
           T P    S S + PPGN PG   + P++     G P++  Y  FP +  PH   + P + 
Sbjct: 525 TAPSQPASLSLLGPPGNTPGHRNVPPILKRSSIGTPSQQAY--FPDA--PHNCHSVP-QN 579

Query: 728 TSLP 739
           +S P
Sbjct: 580 SSYP 583


>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 835 RSSTSWRRCGRTGLLRRASVCGSCGSRRCHDPW*TRSFSW 716
           +S T  RRCG+     + S C  CG         TRS++W
Sbjct: 14  KSHTICRRCGKRSFHIQKSTCACCGYPAAK----TRSYNW 49


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 835 RSSTSWRRCGRTGLLRRASVCGSCGSRRCHDPW*TRSFSW 716
           +S T  RRCG+     + S C  CG         TRS++W
Sbjct: 14  KSHTICRRCGKRSFHIQKSTCACCGYPAAK----TRSYNW 49


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 554 RPMYKGSPSSVSPPGNAPGGTLDPLVGT 637
           RP+   SPSS S   +A  G ++P VGT
Sbjct: 187 RPVLDRSPSSFSQSRSAVSGNMNPGVGT 214


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 536 LPSWRTRPMYKGSPSSVSPPGNAPGGTLD 622
           LP  RT   Y+ +PSS     NAP  T +
Sbjct: 35  LPQDRTTSTYRATPSSADAGYNAPSSTFE 63


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 463 ESKLLSPKRNVADAVRLLNLAGG 531
           +S LLSP+ N  D V L+++AGG
Sbjct: 318 QSFLLSPEENSLDDVLLVSIAGG 340


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 335 VSYRLF*FAAKKKQMVDYFHDYSSI 261
           + YRL  FA  K     Y HDYS I
Sbjct: 408 IPYRLQVFATAKVTFFQYLHDYSYI 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,775,790
Number of Sequences: 5004
Number of extensions: 85819
Number of successful extensions: 247
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)